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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15437 and 15438 are separated by 657 nucleotides
15438 and 15439 are separated by 370 nucleotides
15439 and 15440 are separated by 286 nucleotides
15440 and 15441 are separated by 595 nucleotides
mRNA_7069: 15437 - HMMPfam-DNA-directed RNA polymerase III subunit Rpc31-PF11705, at 806,497 to 812,015
15437
mRNA_7070: 15438 - K13953 adhP alcohol dehydrogenase, propanol-preferring, at 812,673 to 814,209
15438
mRNA_7071: 15439 - BLAST histone H3 h3.1 [Schizosaccharomyces japonicus yF..., at 814,580 to 815,327
15439
mRNA_7072: 15440 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 815,614 to 818,476
15440
mRNA_7073: 15441 - HMMPfam-Domain of unknown function DUF77-PF01910,SUPERFAMILY--SSF89957,TIGRFAM-TIGR00106 uncharacterized protein, MTH1187 family-TIGR00106, at 819,072 to 820,252
15441
Group
Condition
mRNA
_7069
mRNA
_7070
mRNA
_7071
mRNA
_7072
mRNA
_7073
15437
15438
15439
15440
15441
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.6
+0.9
-0.6
-2.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.4
-0.4
-0.5
-0.1
auxotrophy
Dropout Complete
-0.0
+0.4
+0.3
+0.1
-0.9
auxotrophy
YNB Glucose
+0.1
+0.2
+0.3
+0.0
-0.8
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.1
+0.4
-0.4
-0.1
growth on ypd
YPD
-0.1
-0.2
-0.0
+0.5
+0.0
growth on oleic acid
YNB Glucose
-0.0
-0.1
+0.6
+0.3
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.1
+0.3
-0.4
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.2
+0.8
-0.0
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.0
+0.8
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.2
+0.5
+0.0
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.3
+0.2
+0.0
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.2
+0.1
+0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.2
+0.5
-0.2
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.1
+1.1
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.2
+0.4
+0.1
+0.6
growth on oleic acid
YNB Oleic Acid
-0.1
-0.0
+1.5
+0.4
-0.5
growth on ricinoleic acid
YNB Glucose
-0.1
+0.2
+1.1
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.2
+0.2
+0.5
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.0
+2.3
+0.8
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.1
+2.2
+0.7
+0.9
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