Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 15440 and 15441 are separated by 595 nucleotides15441 and 15442 are separated by 1259 nucleotides15442 and 15443 are separated by 541 nucleotides15443 and 15444 are separated by 1064 nucleotides mRNA_7072: 15440 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 815,614 to 818,476 15440 mRNA_7073: 15441 - HMMPfam-Domain of unknown function DUF77-PF01910,SUPERFAMILY--SSF89957,TIGRFAM-TIGR00106 uncharacterized protein, MTH1187 family-TIGR00106, at 819,072 to 820,252 15441 mRNA_7074: 15442 - K02218 CSNK1, CKI casein kinase 1, at 821,512 to 823,166 15442 mRNA_7075: 15443 - HMMPfam-Late embryogenesis abundant protein-PF03168,SUPERFAMILY--SSF117070, at 823,708 to 824,890 15443 mRNA_7076: 15444 - K17413 MRPS35 small subunit ribosomal protein S35, at 825,955 to 826,915 15444
Group Condition mRNA_7072 mRNA_7073 mRNA_7074 mRNA_7075 mRNA_7076
15440 15441 15442 15443 15444
ypd buoyancy 40 hrs No Buoyancy Separation -0.6 -2.0 N.D. -0.4 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate -0.5 -0.1 N.D. -0.6 N.D.
facs on lipid accumulation Sorted No BODIPY Gate -0.4 +0.3 N.D. -0.9 N.D.
facs on lipid accumulation Sorted High BODIPY Gate -0.4 +0.2 N.D. -0.4 N.D.
auxotrophy Dropout Complete +0.1 -0.9 N.D. +0.3 N.D.
ypd buoyancy 40 hrs Low Buoyancy -0.0 -0.4 N.D. +0.0 N.D.
auxotrophy YNB Glucose +0.0 -0.8 N.D. +0.4 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.0 +0.3 N.D. -0.6 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.2 -0.0 N.D. +0.1 N.D.
growth on ricinoleic acid YNB Glucose +0.3 -0.0 N.D. -0.4 N.D.
auxotrophy YNB Glucose 75mM Methionine -0.4 -0.1 N.D. +0.4 N.D.
growth on oleic acid YNB Oleic Acid +0.4 -0.5 N.D. +0.1 N.D.
growth on ypd YPD +0.5 +0.0 N.D. -0.4 N.D.
growth on oleic acid YNB Glucose +0.3 -0.5 N.D. +0.5 N.D.
ypd buoyancy 40 hrs High Buoyancy -0.2 +0.3 N.D. +0.2 N.D.
ypd buoyancy 40 hrs Median Buoyancy +0.0 +0.3 N.D. +0.1 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.1 +0.6 N.D. -0.2 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid +0.8 +0.5 N.D. -0.7 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.5 +0.4 N.D. -0.1 N.D.
auxotrophy YNB Glucose 75mM Arginine +0.2 +0.2 N.D. +0.3 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid +0.7 +0.9 N.D. -0.4 N.D.
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