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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15442 and 15443 are separated by 541 nucleotides
15443 and 15444 are separated by 1064 nucleotides
15444 and 15445 are separated by 169 nucleotides
15445 and 15446 are separated by 454 nucleotides
mRNA_7074: 15442 - K02218 CSNK1, CKI casein kinase 1, at 821,512 to 823,166
15442
mRNA_7075: 15443 - HMMPfam-Late embryogenesis abundant protein-PF03168,SUPERFAMILY--SSF117070, at 823,708 to 824,890
15443
mRNA_7076: 15444 - K17413 MRPS35 small subunit ribosomal protein S35, at 825,955 to 826,915
15444
mRNA_7077: 15445 - K18789 XGD1 xylogalacturonan beta-1,3-xylosyltransferase, at 827,085 to 831,280
15445
mRNA_7078: 15446 - Hypothetical Protein, at 831,735 to 832,558
15446
Group
Condition
mRNA
_7074
mRNA
_7075
mRNA
_7076
mRNA
_7077
mRNA
_7078
15442
15443
15444
15445
15446
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.4
N.D.
-0.7
-1.0
growth on ypd
YPD
N.D.
-0.4
N.D.
+0.2
-0.6
growth on ricinoleic acid
YNB Glucose
N.D.
-0.4
N.D.
+0.2
-0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
N.D.
-0.2
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.4
N.D.
+0.9
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.7
N.D.
+0.8
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
N.D.
-0.2
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.9
N.D.
+0.7
+0.5
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
N.D.
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.6
N.D.
-0.0
+1.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.6
N.D.
+0.6
+0.9
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.4
N.D.
+0.6
+0.9
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
N.D.
+0.9
+0.1
growth on oleic acid
YNB Glucose
N.D.
+0.5
N.D.
+0.5
+0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.4
N.D.
+0.2
+0.9
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.3
N.D.
+0.1
+1.3
auxotrophy
Dropout Complete
N.D.
+0.3
N.D.
+0.5
+1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
N.D.
+0.0
+1.7
auxotrophy
YNB Glucose
N.D.
+0.4
N.D.
+0.3
+1.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
N.D.
+0.1
+1.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
N.D.
-0.1
+2.4
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