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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15443 and 15444 are separated by 1064 nucleotides
15444 and 15445 are separated by 169 nucleotides
15445 and 15446 are separated by 454 nucleotides
15446 and 15447 are separated by 462 nucleotides
mRNA_7075: 15443 - HMMPfam-Late embryogenesis abundant protein-PF03168,SUPERFAMILY--SSF117070, at 823,708 to 824,890
15443
mRNA_7076: 15444 - K17413 MRPS35 small subunit ribosomal protein S35, at 825,955 to 826,915
15444
mRNA_7077: 15445 - K18789 XGD1 xylogalacturonan beta-1,3-xylosyltransferase, at 827,085 to 831,280
15445
mRNA_7078: 15446 - Hypothetical Protein, at 831,735 to 832,558
15446
mRNA_7079: 15447 - Hypothetical Protein, at 833,021 to 833,925
15447
Group
Condition
mRNA
_7075
mRNA
_7076
mRNA
_7077
mRNA
_7078
mRNA
_7079
15443
15444
15445
15446
15447
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
N.D.
-0.7
-1.0
+0.2
growth on ypd
YPD
-0.4
N.D.
+0.2
-0.6
+0.1
growth on ricinoleic acid
YNB Glucose
-0.4
N.D.
+0.2
-0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
-0.2
-0.3
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
-0.2
-0.0
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
N.D.
+0.9
-0.6
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
N.D.
+0.8
-0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
N.D.
+0.5
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
N.D.
+0.7
+0.5
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
N.D.
-0.0
+1.3
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
N.D.
+0.6
+0.9
-0.2
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+0.9
+0.1
+0.0
growth on oleic acid
YNB Glucose
+0.5
N.D.
+0.5
+0.3
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
N.D.
+0.6
+0.9
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.4
N.D.
+0.2
+0.9
-0.2
auxotrophy
Dropout Complete
+0.3
N.D.
+0.5
+1.0
-0.3
auxotrophy
YNB Glucose
+0.4
N.D.
+0.3
+1.1
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.3
N.D.
+0.1
+1.3
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
+0.1
+1.9
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
+0.0
+1.7
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
-0.1
+2.4
-0.2
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