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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15450 and 15451 are separated by 7 nucleotides
15451 and 15452 are separated by 149 nucleotides
15452 and 15453 are separated by 164 nucleotides
15453 and 15454 are separated by 146 nucleotides
mRNA_7082: 15450 - K20406 NPRL3 nitrogen permease regulator 3-like protein, at 838,009 to 840,569
15450
mRNA_7083: 15451 - K18803 HPM1 protein-histidine N-methyltransferase, at 840,577 to 841,991
15451
mRNA_7084: 15452 - KOG1575 Voltage-gated shaker-like K+ channel, subunit beta/KCNAB, at 842,141 to 843,806
15452
mRNA_7085: 15453 - HMMPfam-TRF2-interacting telomeric protein/Rap1 - C terminal domain-PF11626,SUPERFAMILY--SSF46689, at 843,971 to 847,409
15453
mRNA_7086: 15454 - HMMPfam-Shugoshin C terminus-PF07557, at 847,556 to 851,531
15454
Group
Condition
mRNA
_7082
mRNA
_7083
mRNA
_7084
mRNA
_7085
mRNA
_7086
15450
15451
15452
15453
15454
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
-2.8
+0.1
-0.2
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-2.1
+0.1
-1.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+0.1
-0.4
-1.5
-0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.1
-1.5
+0.2
+0.6
-0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-1.2
+0.3
-0.8
-0.0
auxotrophy
Dropout Complete
-0.6
-0.3
+0.3
-1.7
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-1.3
+0.2
+0.2
-0.9
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-1.1
-0.9
-0.0
+0.2
-0.0
growth on ricinoleic acid
YNB Glucose
+0.3
-0.2
-0.2
-1.0
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.6
-0.2
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.4
-0.1
-0.3
+0.2
auxotrophy
YNB Glucose
-0.5
-0.1
+0.4
-0.7
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.3
-0.1
+1.1
-0.7
growth on oleic acid
YNB Glucose
+0.2
+0.4
-0.2
-0.6
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.6
+0.1
+0.9
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.4
+0.0
+0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.7
+0.4
+0.3
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+1.1
-0.2
-0.2
+0.2
growth on ypd
YPD
-0.1
-1.8
+0.2
+2.6
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.9
-0.1
-0.4
+0.1
growth on oleic acid
YNB Oleic Acid
-0.4
+1.3
-0.1
+0.8
-0.3
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