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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15451 and 15452 are separated by 149 nucleotides
15452 and 15453 are separated by 164 nucleotides
15453 and 15454 are separated by 146 nucleotides
15454 and 15455 are separated by 38 nucleotides
mRNA_7083: 15451 - K18803 HPM1 protein-histidine N-methyltransferase, at 840,577 to 841,991
15451
mRNA_7084: 15452 - KOG1575 Voltage-gated shaker-like K+ channel, subunit beta/KCNAB, at 842,141 to 843,806
15452
mRNA_7085: 15453 - HMMPfam-TRF2-interacting telomeric protein/Rap1 - C terminal domain-PF11626,SUPERFAMILY--SSF46689, at 843,971 to 847,409
15453
mRNA_7086: 15454 - HMMPfam-Shugoshin C terminus-PF07557, at 847,556 to 851,531
15454
mRNA_7087: 15455 - Hypothetical Protein, at 851,570 to 853,119
15455
Group
Condition
mRNA
_7083
mRNA
_7084
mRNA
_7085
mRNA
_7086
mRNA
_7087
15451
15452
15453
15454
15455
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.4
-1.5
-0.7
-3.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-2.8
+0.1
-0.2
-0.5
+0.8
facs on lipid accumulation
Sorted No BODIPY Gate
-2.1
+0.1
-1.1
+0.1
+0.6
auxotrophy
Dropout Complete
-0.3
+0.3
-1.7
+0.1
+0.2
growth on ricinoleic acid
YNB Glucose
-0.2
-0.2
-1.0
-0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.6
-0.2
-0.2
-0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.2
+0.3
-0.8
-0.0
+0.7
auxotrophy
YNB Glucose 75mM Methionine
-0.9
-0.0
+0.2
-0.0
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.5
+0.2
+0.6
-0.8
+0.6
growth on oleic acid
YNB Glucose
+0.4
-0.2
-0.6
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.1
-0.3
+0.2
+0.4
auxotrophy
YNB Glucose
-0.1
+0.4
-0.7
+0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.9
-0.1
-0.4
+0.1
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.2
-0.9
-0.3
+0.8
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.0
+0.2
-0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.1
-0.2
-0.2
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.1
+1.1
-0.7
+1.0
ypd buoyancy
40 hrs High Buoyancy
+0.7
+0.4
+0.3
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
+0.1
+0.9
-0.3
+1.1
growth on oleic acid
YNB Oleic Acid
+1.3
-0.1
+0.8
-0.3
-0.1
growth on ypd
YPD
-1.8
+0.2
+2.6
+0.0
+0.7
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