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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15453 and 15454 are separated by 146 nucleotides
15454 and 15455 are separated by 38 nucleotides
15455 and 15456 are separated by 790 nucleotides
15456 and 15457 are separated by 2163 nucleotides
mRNA_7085: 15453 - HMMPfam-TRF2-interacting telomeric protein/Rap1 - C terminal domain-PF11626,SUPERFAMILY--SSF46689, at 843,971 to 847,409
15453
mRNA_7086: 15454 - HMMPfam-Shugoshin C terminus-PF07557, at 847,556 to 851,531
15454
mRNA_7087: 15455 - Hypothetical Protein, at 851,570 to 853,119
15455
mRNA_7088: 15456 - K10739 RFA2, RPA2 replication factor A2, at 853,910 to 855,078
15456
mRNA_7089: 15457 - Hypothetical Protein, at 857,242 to 857,760
15457
Group
Condition
mRNA
_7085
mRNA
_7086
mRNA
_7087
mRNA
_7088
mRNA
_7089
15453
15454
15455
15456
15457
ypd buoyancy
40 hrs No Buoyancy Separation
-1.5
-0.7
-3.0
N.D.
-1.1
auxotrophy
Dropout Complete
-1.7
+0.1
+0.2
N.D.
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-1.1
+0.1
+0.6
N.D.
-1.3
growth on oleic acid
YNB Glucose
-0.6
-0.1
+0.0
N.D.
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.1
-0.6
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
-0.0
+0.7
N.D.
-0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.0
-0.3
N.D.
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
-0.3
+0.8
N.D.
-0.0
growth on ricinoleic acid
YNB Glucose
-1.0
-0.1
+0.3
N.D.
+0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.2
-0.1
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.2
-0.1
N.D.
-0.0
growth on oleic acid
YNB Oleic Acid
+0.8
-0.3
-0.1
N.D.
-0.6
auxotrophy
YNB Glucose
-0.7
+0.2
+0.1
N.D.
+0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.2
+0.4
N.D.
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.3
+0.1
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
+0.2
N.D.
+0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.5
+0.8
N.D.
+0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
-0.8
+0.6
N.D.
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.9
-0.3
+1.1
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.1
-0.7
+1.0
N.D.
+0.9
growth on ypd
YPD
+2.6
+0.0
+0.7
N.D.
-0.2
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