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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15457 and 15458 are separated by 198 nucleotides
15458 and 15459 are separated by 305 nucleotides
15459 and 15460 are separated by 336 nucleotides
15460 and 15461 are separated by 358 nucleotides
mRNA_7089: 15457 - Hypothetical Protein, at 857,242 to 857,760
15457
mRNA_7090: 15458 - Hypothetical Protein, at 857,959 to 859,367
15458
mRNA_7091: 15459 - ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157, at 859,673 to 862,971
15459
mRNA_7092: 15460 - KOG2545 Conserved membrane protein, at 863,308 to 866,540
15460
mRNA_7093: 15461 - K16073 ALR, MNR magnesium transporter, at 866,899 to 868,705
15461
Group
Condition
mRNA
_7089
mRNA
_7090
mRNA
_7091
mRNA
_7092
mRNA
_7093
15457
15458
15459
15460
15461
ypd buoyancy
40 hrs No Buoyancy Separation
-1.1
-0.9
+0.1
-0.7
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-1.3
-0.4
-0.1
-0.6
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.4
-0.1
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.3
-0.2
-0.2
N.D.
growth on oleic acid
YNB Oleic Acid
-0.6
-0.1
-0.3
+0.2
N.D.
auxotrophy
Dropout Complete
-0.5
-0.1
-0.2
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.3
-0.2
-0.1
N.D.
growth on oleic acid
YNB Glucose
-0.5
+0.2
-0.2
+0.2
N.D.
growth on ypd
YPD
-0.2
+0.0
+0.2
-0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.4
-0.2
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.5
+0.2
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
+0.1
-0.1
N.D.
auxotrophy
YNB Glucose
+0.5
-0.3
-0.2
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.2
-0.0
+0.0
N.D.
growth on ricinoleic acid
YNB Glucose
+0.5
+0.2
-0.2
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.7
-0.2
+0.0
-0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.4
-0.0
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
+0.3
+0.0
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.6
+0.1
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.9
+0.6
-0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.9
+0.9
-0.0
+0.5
N.D.
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