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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15458 and 15459 are separated by 305 nucleotides
15459 and 15460 are separated by 336 nucleotides
15460 and 15461 are separated by 358 nucleotides
15461 and 15462 are separated by 1789 nucleotides
mRNA_7090: 15458 - Hypothetical Protein, at 857,959 to 859,367
15458
mRNA_7091: 15459 - ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157, at 859,673 to 862,971
15459
mRNA_7092: 15460 - KOG2545 Conserved membrane protein, at 863,308 to 866,540
15460
mRNA_7093: 15461 - K16073 ALR, MNR magnesium transporter, at 866,899 to 868,705
15461
mRNA_7094: 15462 - KOG1667 Zn2+-binding protein Melusin/RAR1, contains CHORD domain, at 870,495 to 871,178
15462
Group
Condition
mRNA
_7090
mRNA
_7091
mRNA
_7092
mRNA
_7093
mRNA
_7094
15458
15459
15460
15461
15462
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
+0.1
-0.7
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.1
-0.6
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.2
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.1
-0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.2
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose
-0.3
-0.2
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.0
-0.0
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.5
+0.2
+0.1
N.D.
N.D.
auxotrophy
Dropout Complete
-0.1
-0.2
+0.2
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
-0.3
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
-0.2
-0.1
N.D.
N.D.
growth on ypd
YPD
+0.0
+0.2
-0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.2
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.0
+0.0
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.2
-0.2
+0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.0
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
-0.1
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.0
+0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
+0.1
+0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.9
-0.0
+0.5
N.D.
N.D.
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