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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15467 and 15468 are separated by 375 nucleotides
15468 and 15469 are separated by 97 nucleotides
15469 and 15470 are separated by 454 nucleotides
15470 and 15471 are separated by 1249 nucleotides
mRNA_7099: 15467 - K12845 SNU13, NHP2L U4/U6 small nuclear ribonucleoprotein SNU13, at 879,733 to 880,505
15467
mRNA_7100: 15468 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 880,881 to 881,621
15468
mRNA_7101: 15469 - K08968 E1.8.4.14 L-methionine (R)-S-oxide reductase, at 881,719 to 882,426
15469
mRNA_7102: 15470 - K03441 GLP-F aquaglyceroporin related protein, other eukaryote, at 882,881 to 885,755
15470
mRNA_7103: 15471 - Hypothetical Protein, at 887,005 to 887,880
15471
Group
Condition
mRNA
_7099
mRNA
_7100
mRNA
_7101
mRNA
_7102
mRNA
_7103
15467
15468
15469
15470
15471
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.4
+0.2
-0.4
-3.5
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.4
-0.0
+0.2
-2.7
growth on ypd
YPD
N.D.
-0.4
-0.0
-0.1
-1.6
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.9
-0.4
-0.3
-1.8
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.4
-0.1
+0.1
-1.5
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.3
-0.2
+0.1
-0.4
auxotrophy
Dropout Complete
N.D.
-0.3
-0.0
-0.1
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.2
+0.2
-0.1
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
-0.3
-0.0
-0.1
growth on oleic acid
YNB Glucose
N.D.
-0.0
-0.1
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
-0.0
-0.2
+0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.5
-0.1
+0.3
+0.6
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
+0.3
+0.1
-0.2
auxotrophy
YNB Glucose
N.D.
+0.2
+0.1
+0.1
+0.0
growth on oleic acid
YNB Oleic Acid
N.D.
-0.3
-0.3
+0.2
+1.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
-0.0
+0.1
+0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
-0.0
+0.1
+0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.0
+0.0
-0.0
+0.8
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.5
-0.1
+0.4
+1.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.6
-0.1
-0.0
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
-0.0
+0.2
+1.3
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