Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 15474 and 15475 are separated by 214 nucleotides15475 and 15476 are separated by 136 nucleotides15476 and 15477 are separated by 323 nucleotides15477 and 15478 are separated by 370 nucleotides mRNA_7106: 15474 - K11313 SUPT3H, SPT3 transcription initiation protein SPT3, at 895,700 to 897,201 15474 mRNA_7107: 15475 - KOG2950 Uncharacterized protein involved in protein-protein interaction, contains polyproline-binding GYF domain, at 897,416 to 899,091 15475 mRNA_7108: 15476 - HMMPfam-Arrestin (or S-antigen), C-terminal domain-PF02752,SMART-Arrestin (or S-antigen), C-terminal domain-SM01017,SUPERFAMILY--SSF81296, at 899,228 to 903,559 15476 mRNA_7109: 15477 - HMMPfam-C2 domain-PF00168,ProSiteProfiles-C2 domain profile.-PS50004,SMART-Protein kinase C conserved region 2 (CalB)-SM00239,SUPERFAMILY--SSF49562, at 903,883 to 906,158 15477 mRNA_7110: 15478 - HMMPfam-Zinc-binding dehydrogenase-PF00107,HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SMART-Enoylreductase-SM00829,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 906,529 to 908,168 15478
Group Condition mRNA_7106 mRNA_7107 mRNA_7108 mRNA_7109 mRNA_7110
15474 15475 15476 15477 15478
buoyancy on lipid accumulation 40 hrs High Buoyancy -1.3 -0.4 -0.0 -0.6 -0.1
facs on lipid accumulation Sorted Low BODIPY Gate +1.0 -2.3 -0.1 -0.0 -0.3
growth on oleic acid YNB Glucose -0.4 -0.3 -0.0 -0.2 -0.2
growth on ricinoleic acid YNB Ricinoleic Acid +0.6 -1.9 +0.3 +0.2 -0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2 -0.4 -0.0 +0.0 -0.2
auxotrophy YNB Glucose 75mM Methionine +0.3 -0.5 -0.3 -0.4 -0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.6 -0.9 -0.1 -0.4 +0.0
facs on lipid accumulation Sorted No BODIPY Gate +0.7 -0.6 -0.3 -0.5 -0.0
ypd buoyancy 40 hrs Median Buoyancy -0.1 -0.6 +0.2 -0.0 -0.2
auxotrophy YNB Glucose 75mM Arginine -0.0 -0.1 -0.1 -0.2 -0.1
ypd buoyancy 40 hrs No Buoyancy Separation +0.0 +0.8 -0.3 +0.0 -0.9
facs on lipid accumulation Sorted High BODIPY Gate -0.5 +0.0 -0.0 -0.4 +0.5
growth on ricinoleic acid YNB Glucose +0.4 -0.5 +0.1 -0.1 -0.0
ypd buoyancy 40 hrs High Buoyancy -0.0 -0.0 +0.0 -0.2 +0.0
auxotrophy YNB Glucose +0.5 +0.0 -0.1 -0.1 -0.4
growth on oleic acid YNB Oleic Acid +0.1 -0.2 -0.2 +0.1 +0.1
growth on ricinoleic acid YNB Methylricinoleic Acid +0.8 -0.6 +0.0 -0.2 -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy +1.3 -0.3 -0.1 -0.4 -0.0
ypd buoyancy 40 hrs Low Buoyancy -0.3 +0.7 +0.3 +0.1 -0.2
auxotrophy Dropout Complete +1.1 +0.3 -0.0 -0.3 +0.1
growth on ypd YPD +1.1 +0.4 +0.1 -0.3 -0.1
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