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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15474 and 15475 are separated by 214 nucleotides
15475 and 15476 are separated by 136 nucleotides
15476 and 15477 are separated by 323 nucleotides
15477 and 15478 are separated by 370 nucleotides
mRNA_7106: 15474 - K11313 SUPT3H, SPT3 transcription initiation protein SPT3, at 895,700 to 897,201
15474
mRNA_7107: 15475 - KOG2950 Uncharacterized protein involved in protein-protein interaction, contains polyproline-binding GYF domain, at 897,416 to 899,091
15475
mRNA_7108: 15476 - HMMPfam-Arrestin (or S-antigen), C-terminal domain-PF02752,SMART-Arrestin (or S-antigen), C-terminal domain-SM01017,SUPERFAMILY--SSF81296, at 899,228 to 903,559
15476
mRNA_7109: 15477 - HMMPfam-C2 domain-PF00168,ProSiteProfiles-C2 domain profile.-PS50004,SMART-Protein kinase C conserved region 2 (CalB)-SM00239,SUPERFAMILY--SSF49562, at 903,883 to 906,158
15477
mRNA_7110: 15478 - HMMPfam-Zinc-binding dehydrogenase-PF00107,HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SMART-Enoylreductase-SM00829,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 906,529 to 908,168
15478
Group
Condition
mRNA
_7106
mRNA
_7107
mRNA
_7108
mRNA
_7109
mRNA
_7110
15474
15475
15476
15477
15478
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.3
-0.4
-0.0
-0.6
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.0
-2.3
-0.1
-0.0
-0.3
growth on oleic acid
YNB Glucose
-0.4
-0.3
-0.0
-0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
-1.9
+0.3
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.4
-0.0
+0.0
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.5
-0.3
-0.4
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
-0.9
-0.1
-0.4
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.7
-0.6
-0.3
-0.5
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.6
+0.2
-0.0
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.1
-0.1
-0.2
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.8
-0.3
+0.0
-0.9
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
+0.0
-0.0
-0.4
+0.5
growth on ricinoleic acid
YNB Glucose
+0.4
-0.5
+0.1
-0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.0
+0.0
-0.2
+0.0
auxotrophy
YNB Glucose
+0.5
+0.0
-0.1
-0.1
-0.4
growth on oleic acid
YNB Oleic Acid
+0.1
-0.2
-0.2
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.8
-0.6
+0.0
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.3
-0.3
-0.1
-0.4
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.7
+0.3
+0.1
-0.2
auxotrophy
Dropout Complete
+1.1
+0.3
-0.0
-0.3
+0.1
growth on ypd
YPD
+1.1
+0.4
+0.1
-0.3
-0.1
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