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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15476 and 15477 are separated by 323 nucleotides
15477 and 15478 are separated by 370 nucleotides
15478 and 15479 are separated by 280 nucleotides
15479 and 15480 are separated by 399 nucleotides
mRNA_7108: 15476 - HMMPfam-Arrestin (or S-antigen), C-terminal domain-PF02752,SMART-Arrestin (or S-antigen), C-terminal domain-SM01017,SUPERFAMILY--SSF81296, at 899,228 to 903,559
15476
mRNA_7109: 15477 - HMMPfam-C2 domain-PF00168,ProSiteProfiles-C2 domain profile.-PS50004,SMART-Protein kinase C conserved region 2 (CalB)-SM00239,SUPERFAMILY--SSF49562, at 903,883 to 906,158
15477
mRNA_7110: 15478 - HMMPfam-Zinc-binding dehydrogenase-PF00107,HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SMART-Enoylreductase-SM00829,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 906,529 to 908,168
15478
mRNA_7111: 15479 - Interpro Subunit 11 of the general transcription factor TFIIH, at 908,449 to 909,688
15479
mRNA_7112: 15480 - Interpro DNA-directed RNA polymerase I subunit RPA34.5 0, at 910,088 to 911,391
15480
Group
Condition
mRNA
_7108
mRNA
_7109
mRNA
_7110
mRNA
_7111
mRNA
_7112
15476
15477
15478
15479
15480
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.0
-0.9
-0.7
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.5
-0.0
+0.2
-0.2
auxotrophy
YNB Glucose
-0.1
-0.1
-0.4
+0.3
-0.6
growth on oleic acid
YNB Glucose
-0.0
-0.2
-0.2
-0.0
-0.3
auxotrophy
Dropout Complete
-0.0
-0.3
+0.1
+0.3
-0.8
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.4
-0.0
+0.5
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.4
+0.0
+0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.2
-0.1
+0.3
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.2
-0.1
+0.6
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.6
-0.1
+0.4
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.0
-0.3
-0.1
+0.2
growth on ypd
YPD
+0.1
-0.3
-0.1
+0.0
+0.1
growth on oleic acid
YNB Oleic Acid
-0.2
+0.1
+0.1
-0.0
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.2
-0.0
-0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.2
+0.0
+0.1
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.0
-0.2
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.4
-0.0
+0.5
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
-0.0
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.0
-0.2
+0.5
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.1
-0.2
+0.3
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.4
+0.5
+0.9
+0.1
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