Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
15477 and 15478 are separated by 370 nucleotides
15478 and 15479 are separated by 280 nucleotides
15479 and 15480 are separated by 399 nucleotides
15480 and 15481 are separated by 211 nucleotides
mRNA_7109: 15477 - HMMPfam-C2 domain-PF00168,ProSiteProfiles-C2 domain profile.-PS50004,SMART-Protein kinase C conserved region 2 (CalB)-SM00239,SUPERFAMILY--SSF49562, at 903,883 to 906,158
15477
mRNA_7110: 15478 - HMMPfam-Zinc-binding dehydrogenase-PF00107,HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SMART-Enoylreductase-SM00829,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 906,529 to 908,168
15478
mRNA_7111: 15479 - Interpro Subunit 11 of the general transcription factor TFIIH, at 908,449 to 909,688
15479
mRNA_7112: 15480 - Interpro DNA-directed RNA polymerase I subunit RPA34.5 0, at 910,088 to 911,391
15480
mRNA_7113: 15481 - Hypothetical Protein, at 911,603 to 912,181
15481
Group
Condition
mRNA
_7109
mRNA
_7110
mRNA
_7111
mRNA
_7112
mRNA
_7113
15477
15478
15479
15480
15481
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.9
-0.7
-0.3
-2.7
growth on ypd
YPD
-0.3
-0.1
+0.0
+0.1
-1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.0
-0.3
-0.1
-0.9
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.2
+0.3
+0.1
-0.8
auxotrophy
YNB Glucose
-0.1
-0.4
+0.3
-0.6
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.0
+0.5
-0.3
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.1
+0.3
-0.3
-0.1
auxotrophy
Dropout Complete
-0.3
+0.1
+0.3
-0.8
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
-0.0
+0.2
-0.2
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
+0.6
-0.4
-0.1
growth on oleic acid
YNB Glucose
-0.2
-0.2
-0.0
-0.3
+0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
+0.3
+0.0
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.0
+0.1
+0.3
-0.4
growth on ricinoleic acid
YNB Glucose
-0.1
-0.0
+0.3
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
-0.1
+0.4
+0.0
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.2
+0.5
+0.2
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
+0.1
-0.0
-0.0
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.0
+0.2
-0.1
+0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.0
+0.5
+0.2
+0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.3
-0.1
+0.2
+1.7
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.5
+0.9
+0.1
+0.8
remove
mRNA_7109
plot
remove
mRNA_7110
plot
remove
mRNA_7111
remove
mRNA_7112
plot
remove
mRNA_7113
plot