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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15478 and 15479 are separated by 280 nucleotides
15479 and 15480 are separated by 399 nucleotides
15480 and 15481 are separated by 211 nucleotides
15481 and 15482 are separated by 889 nucleotides
mRNA_7110: 15478 - HMMPfam-Zinc-binding dehydrogenase-PF00107,HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SMART-Enoylreductase-SM00829,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 906,529 to 908,168
15478
mRNA_7111: 15479 - Interpro Subunit 11 of the general transcription factor TFIIH, at 908,449 to 909,688
15479
mRNA_7112: 15480 - Interpro DNA-directed RNA polymerase I subunit RPA34.5 0, at 910,088 to 911,391
15480
mRNA_7113: 15481 - Hypothetical Protein, at 911,603 to 912,181
15481
mRNA_7114: 15482 - K00383 GSR, gor glutathione reductase (NADPH), at 913,071 to 914,998
15482
Group
Condition
mRNA
_7110
mRNA
_7111
mRNA
_7112
mRNA
_7113
mRNA
_7114
15478
15479
15480
15481
15482
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
-0.7
-0.3
-2.7
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.3
-0.1
-0.9
N.D.
growth on ypd
YPD
-0.1
+0.0
+0.1
-1.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.3
+0.1
-0.8
N.D.
auxotrophy
YNB Glucose
-0.4
+0.3
-0.6
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.3
+0.0
-0.5
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.3
-0.3
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.5
-0.3
-0.3
N.D.
auxotrophy
Dropout Complete
+0.1
+0.3
-0.8
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.6
-0.4
-0.1
N.D.
growth on oleic acid
YNB Glucose
-0.2
-0.0
-0.3
+0.5
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.1
+0.3
-0.4
N.D.
growth on ricinoleic acid
YNB Glucose
-0.0
+0.3
+0.1
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.2
-0.2
+0.3
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
-0.0
-0.0
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.5
+0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.4
+0.0
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.2
-0.1
+0.9
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.5
+0.2
+0.7
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.1
+0.2
+1.7
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
+0.9
+0.1
+0.8
N.D.
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