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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15479 and 15480 are separated by 399 nucleotides
15480 and 15481 are separated by 211 nucleotides
15481 and 15482 are separated by 889 nucleotides
15482 and 15483 are separated by 637 nucleotides
mRNA_7111: 15479 - Interpro Subunit 11 of the general transcription factor TFIIH, at 908,449 to 909,688
15479
mRNA_7112: 15480 - Interpro DNA-directed RNA polymerase I subunit RPA34.5 0, at 910,088 to 911,391
15480
mRNA_7113: 15481 - Hypothetical Protein, at 911,603 to 912,181
15481
mRNA_7114: 15482 - K00383 GSR, gor glutathione reductase (NADPH), at 913,071 to 914,998
15482
mRNA_7115: 15483 - K00297 metF, MTHFR methylenetetrahydrofolate reductase (NADPH), at 915,636 to 918,075
15483
Group
Condition
mRNA
_7111
mRNA
_7112
mRNA
_7113
mRNA
_7114
mRNA
_7115
15479
15480
15481
15482
15483
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.1
-0.9
N.D.
-4.7
growth on oleic acid
YNB Glucose
-0.0
-0.3
+0.5
N.D.
-4.9
auxotrophy
YNB Glucose 75mM Arginine
+0.6
-0.4
-0.1
N.D.
-4.7
auxotrophy
YNB Glucose
+0.3
-0.6
+0.2
N.D.
-4.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.3
-0.1
N.D.
-4.0
growth on ricinoleic acid
YNB Glucose
+0.3
+0.1
-0.2
N.D.
-4.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
+0.2
+0.1
N.D.
-4.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.1
+0.9
N.D.
-4.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
-0.3
-2.7
N.D.
+0.5
growth on oleic acid
YNB Oleic Acid
-0.0
-0.0
+0.5
N.D.
-3.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.2
+0.3
N.D.
-3.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+0.2
+0.7
N.D.
-4.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.0
+0.5
N.D.
-3.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.9
+0.1
+0.8
N.D.
-3.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.2
+1.7
N.D.
-2.8
growth on ypd
YPD
+0.0
+0.1
-1.0
N.D.
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.1
-0.8
N.D.
+0.0
auxotrophy
Dropout Complete
+0.3
-0.8
+0.2
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.3
-0.3
N.D.
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.0
-0.5
N.D.
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.3
-0.4
N.D.
+0.2
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