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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15480 and 15481 are separated by 211 nucleotides
15481 and 15482 are separated by 889 nucleotides
15482 and 15483 are separated by 637 nucleotides
15483 and 15484 are separated by 513 nucleotides
mRNA_7112: 15480 - Interpro DNA-directed RNA polymerase I subunit RPA34.5 0, at 910,088 to 911,391
15480
mRNA_7113: 15481 - Hypothetical Protein, at 911,603 to 912,181
15481
mRNA_7114: 15482 - K00383 GSR, gor glutathione reductase (NADPH), at 913,071 to 914,998
15482
mRNA_7115: 15483 - K00297 metF, MTHFR methylenetetrahydrofolate reductase (NADPH), at 915,636 to 918,075
15483
mRNA_7116: 15484 - K04393 CDC42 cell division control protein 42, at 918,589 to 919,535
15484
Group
Condition
mRNA
_7112
mRNA
_7113
mRNA
_7114
mRNA
_7115
mRNA
_7116
15480
15481
15482
15483
15484
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.9
N.D.
-4.7
-3.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.1
N.D.
-4.0
-2.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-2.7
N.D.
+0.5
-3.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.7
N.D.
-4.4
-1.7
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.1
N.D.
-4.7
+0.7
growth on oleic acid
YNB Glucose
-0.3
+0.5
N.D.
-4.9
+0.4
growth on oleic acid
YNB Oleic Acid
-0.0
+0.5
N.D.
-3.5
-1.0
growth on ricinoleic acid
YNB Glucose
+0.1
-0.2
N.D.
-4.3
+0.4
auxotrophy
YNB Glucose
-0.6
+0.2
N.D.
-4.2
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.8
N.D.
-3.4
-0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.1
N.D.
-4.4
+0.9
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.3
N.D.
-3.3
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.9
N.D.
-4.6
+1.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.5
N.D.
-3.6
+1.2
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.5
N.D.
+0.0
-0.7
growth on ypd
YPD
+0.1
-1.0
N.D.
-0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.4
N.D.
+0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.8
N.D.
+0.0
+0.6
auxotrophy
Dropout Complete
-0.8
+0.2
N.D.
-0.2
+1.0
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.3
N.D.
-0.0
+1.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+1.7
N.D.
-2.8
+2.7
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