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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15490 and 15491 are separated by 147 nucleotides
15491 and 15492 are separated by 248 nucleotides
15492 and 15493 are separated by 513 nucleotides
15493 and 15494 are separated by 1103 nucleotides
mRNA_7122: 15490 - K14791 PWP1 periodic tryptophan protein 1, at 930,377 to 932,524
15490
mRNA_7123: 15491 - K00683 QPCT glutaminyl-peptide cyclotransferase, at 932,672 to 934,092
15491
mRNA_7124: 15492 - K02872 RP-L13Ae, RPL13A large subunit ribosomal protein L13Ae, at 934,341 to 935,492
15492
mRNA_7125: 15493 - K11315 TADA3, ADA3, NGG1 transcriptional adapter 3, at 936,006 to 938,465
15493
mRNA_7126: 15494 - K15122 SLC41A solute carrier family 41, at 939,569 to 941,230
15494
Group
Condition
mRNA
_7122
mRNA
_7123
mRNA
_7124
mRNA
_7125
mRNA
_7126
15490
15491
15492
15493
15494
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.3
N.D.
-2.1
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.4
N.D.
+0.4
-1.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
N.D.
-0.7
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.7
N.D.
+0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.3
N.D.
+0.5
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.1
N.D.
+1.2
-1.0
growth on ricinoleic acid
YNB Glucose
N.D.
-0.4
N.D.
+0.6
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.4
N.D.
+1.1
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.2
N.D.
+0.0
+0.6
auxotrophy
YNB Glucose
N.D.
-0.4
N.D.
+0.8
+0.1
auxotrophy
Dropout Complete
N.D.
-0.4
N.D.
+0.8
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
N.D.
+0.4
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
N.D.
-0.3
+0.8
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.0
N.D.
+0.7
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
N.D.
+0.5
+0.5
growth on oleic acid
YNB Glucose
N.D.
-0.0
N.D.
+0.8
+0.5
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
N.D.
+0.3
+0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
N.D.
+1.4
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.3
N.D.
+1.4
+0.7
growth on ypd
YPD
N.D.
-0.2
N.D.
+0.4
+1.6
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
N.D.
+1.4
+1.0
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