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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15493 and 15494 are separated by 1103 nucleotides
15494 and 15495 are separated by 173 nucleotides
15495 and 15496 are separated by 309 nucleotides
15496 and 15497 are separated by 166 nucleotides
mRNA_7125: 15493 - K11315 TADA3, ADA3, NGG1 transcriptional adapter 3, at 936,006 to 938,465
15493
mRNA_7126: 15494 - K15122 SLC41A solute carrier family 41, at 939,569 to 941,230
15494
mRNA_7127: 15495 - BLAST adenylate cyclase-associated protein [Moesziomyces an..., at 941,404 to 943,862
15495
mRNA_7128: 15496 - K00939 adk, AK adenylate kinase, at 944,172 to 945,488
15496
mRNA_7129: 15497 - K10627 RAD18 E3 ubiquitin-protein ligase RAD18, at 945,655 to 947,671
15497
Group
Condition
mRNA
_7125
mRNA
_7126
mRNA
_7127
mRNA
_7128
mRNA
_7129
15493
15494
15495
15496
15497
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-2.1
-0.6
+0.2
N.D.
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
-0.4
-0.4
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-1.2
-0.2
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.1
-0.1
N.D.
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
-0.4
-0.1
N.D.
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.2
-1.0
-0.1
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.2
-0.3
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.1
-0.4
+0.2
N.D.
-0.4
growth on ricinoleic acid
YNB Glucose
+0.6
-0.1
+0.0
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.7
+0.1
-0.2
N.D.
+0.2
auxotrophy
YNB Glucose
+0.8
+0.1
-0.1
N.D.
+0.0
auxotrophy
Dropout Complete
+0.8
+0.2
-0.2
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.5
-0.3
N.D.
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.6
-0.0
N.D.
+0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.8
+0.0
N.D.
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.4
+0.3
-0.5
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.9
-0.2
N.D.
+0.3
growth on oleic acid
YNB Glucose
+0.8
+0.5
+0.1
N.D.
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.4
+0.7
-0.3
N.D.
-0.1
growth on ypd
YPD
+0.4
+1.6
-0.1
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
+1.4
+1.0
-0.1
N.D.
+0.2
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