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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15495 and 15496 are separated by 309 nucleotides
15496 and 15497 are separated by 166 nucleotides
15497 and 15498 are separated by 334 nucleotides
15498 and 15499 are separated by 451 nucleotides
mRNA_7127: 15495 - BLAST adenylate cyclase-associated protein [Moesziomyces an..., at 941,404 to 943,862
15495
mRNA_7128: 15496 - K00939 adk, AK adenylate kinase, at 944,172 to 945,488
15496
mRNA_7129: 15497 - K10627 RAD18 E3 ubiquitin-protein ligase RAD18, at 945,655 to 947,671
15497
mRNA_7130: 15498 - KOG3077 Uncharacterized conserved protein, at 948,006 to 949,396
15498
mRNA_7131: 15499 - K17800 LETM1, MDM38 LETM1 and EF-hand domain-containing protein 1, mitochondrial, at 949,848 to 952,557
15499
Group
Condition
mRNA
_7127
mRNA
_7128
mRNA
_7129
mRNA
_7130
mRNA
_7131
15495
15496
15497
15498
15499
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
N.D.
-0.1
-0.3
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
N.D.
+0.2
-0.3
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
N.D.
-0.1
-0.2
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
+0.1
-0.7
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
+0.0
-0.1
-0.6
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
+0.2
+0.2
-0.9
auxotrophy
Dropout Complete
-0.2
N.D.
+0.1
+0.1
-0.7
auxotrophy
YNB Glucose 75mM Arginine
-0.3
N.D.
+0.2
+0.3
-0.8
growth on ypd
YPD
-0.1
N.D.
+0.2
-0.0
-0.7
ypd buoyancy
40 hrs High Buoyancy
-0.3
N.D.
+0.3
-0.8
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
+0.2
+0.4
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
N.D.
+0.4
-0.5
+0.0
growth on ricinoleic acid
YNB Glucose
+0.0
N.D.
+0.2
+0.1
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
N.D.
+0.1
+0.2
-0.2
auxotrophy
YNB Glucose
-0.1
N.D.
+0.0
+0.7
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
+0.3
+0.3
-0.1
growth on oleic acid
YNB Glucose
+0.1
N.D.
+0.2
+0.6
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
N.D.
-0.3
+0.2
+0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
N.D.
-0.4
+0.6
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
N.D.
+0.5
+0.0
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
-0.3
+0.9
+0.4
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