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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15497 and 15498 are separated by 334 nucleotides
15498 and 15499 are separated by 451 nucleotides
15499 and 15500 are separated by 222 nucleotides
15500 and 15501 are separated by 242 nucleotides
mRNA_7129: 15497 - K10627 RAD18 E3 ubiquitin-protein ligase RAD18, at 945,655 to 947,671
15497
mRNA_7130: 15498 - KOG3077 Uncharacterized conserved protein, at 948,006 to 949,396
15498
mRNA_7131: 15499 - K17800 LETM1, MDM38 LETM1 and EF-hand domain-containing protein 1, mitochondrial, at 949,848 to 952,557
15499
mRNA_7132: 15500 - K16938 SEPT3_9_12 septin 3/9/12, at 952,780 to 954,588
15500
mRNA_7133: 15501 - Hypothetical Protein, at 954,831 to 956,443
15501
Group
Condition
mRNA
_7129
mRNA
_7130
mRNA
_7131
mRNA
_7132
mRNA
_7133
15497
15498
15499
15500
15501
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.3
-0.6
N.D.
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.3
-0.5
N.D.
-1.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.1
-0.6
N.D.
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.2
-0.4
N.D.
-0.3
growth on ypd
YPD
+0.2
-0.0
-0.7
N.D.
-0.4
growth on ricinoleic acid
YNB Glucose
+0.2
+0.1
-0.5
N.D.
-0.6
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.8
+0.2
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
+0.2
+0.2
-0.9
N.D.
+0.3
auxotrophy
Dropout Complete
+0.1
+0.1
-0.7
N.D.
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.7
-0.0
N.D.
+0.7
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-0.5
+0.0
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.4
-0.6
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.2
-0.2
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.3
-0.8
N.D.
+0.7
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.3
-0.1
N.D.
-0.1
growth on oleic acid
YNB Glucose
+0.2
+0.6
-0.5
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.5
+0.0
+0.3
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.6
+0.2
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.2
+0.6
N.D.
+0.7
auxotrophy
YNB Glucose
+0.0
+0.7
-0.3
N.D.
+0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.9
+0.4
N.D.
+0.8
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