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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15505 and 15506 are separated by 224 nucleotides
15506 and 15507 are separated by 152 nucleotides
15507 and 15508 are separated by 335 nucleotides
15508 and 15509 are separated by 110 nucleotides
mRNA_7137: 15505 - KOG1933 Cholesterol transport protein (Niemann-Pick C disease protein), at 964,045 to 968,474
15505
mRNA_7138: 15506 - K14655 RIB2, PUS8 tRNA pseudouridine synthase 8 / 2,5-diamino-6-(5-phospho-D-ribitylamino)-pyrimidin-4(3H)-one deaminase, at 968,699 to 969,330
15506
mRNA_7139: 15507 - K15272 SLC35A1_2_3 solute carrier family 35 (UDP-sugar transporter), member A1/2/3, at 969,483 to 971,578
15507
mRNA_7140: 15508 - KOG1029 Endocytic adaptor protein intersectin, at 971,914 to 976,417
15508
mRNA_7141: 15509 - BLAST AP-4 complex subunit epsilon [Leucoagaricus sp. SymC...., at 976,528 to 979,510
15509
Group
Condition
mRNA
_7137
mRNA
_7138
mRNA
_7139
mRNA
_7140
mRNA
_7141
15505
15506
15507
15508
15509
growth on ricinoleic acid
YNB Methylricinoleic Acid
-3.2
N.D.
+0.4
+0.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.9
N.D.
+0.7
-0.0
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
N.D.
-0.0
-0.4
-0.4
growth on ricinoleic acid
YNB Glucose
-1.4
N.D.
+0.4
+0.0
+0.6
auxotrophy
YNB Glucose
-1.0
N.D.
+0.6
+0.2
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.8
N.D.
+0.4
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.6
N.D.
+0.3
+0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
-0.2
-0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
-0.4
-0.1
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
+0.0
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
N.D.
-0.1
+0.2
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
+0.1
+0.1
+0.1
growth on oleic acid
YNB Glucose
-0.2
N.D.
+0.3
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
N.D.
+0.0
+0.4
+0.1
growth on ypd
YPD
+0.0
N.D.
+0.1
-0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
+0.2
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.0
+0.2
+0.2
growth on oleic acid
YNB Oleic Acid
-0.3
N.D.
+0.3
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-0.0
+0.3
+0.1
auxotrophy
Dropout Complete
-0.2
N.D.
+0.7
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
+0.5
+0.2
-0.1
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