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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15509 and 15510 are separated by 117 nucleotides
15510 and 15511 are separated by 525 nucleotides
15511 and 15512 are separated by 921 nucleotides
15512 and 15513 are separated by 442 nucleotides
mRNA_7141: 15509 - BLAST AP-4 complex subunit epsilon [Leucoagaricus sp. SymC...., at 976,528 to 979,510
15509
mRNA_7142: 15510 - HMMPfam-Domain of unknown function DUF221-PF02714,HMMPfam-Late exocytosis, associated with Golgi transport-PF13967, at 979,628 to 983,826
15510
mRNA_7143: 15511 - HMMPfam-Protein of unknown function (DUF2421)-PF10334,HMMPfam-Fusaric acid resistance protein-like-PF13515,PRINTS-Brefeldin A-sensitivity protein 4 signature-PR02047,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 984,352 to 987,514
15511
mRNA_7144: 15512 - ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103, at 988,436 to 990,722
15512
mRNA_7145: 15513 - BLAST putative ccch zinc finger dna binding protein [Eu..., at 991,165 to 992,673
15513
Group
Condition
mRNA
_7141
mRNA
_7142
mRNA
_7143
mRNA
_7144
mRNA
_7145
15509
15510
15511
15512
15513
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+0.4
-0.2
-0.2
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
-0.2
-0.5
-0.1
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.4
+0.0
+0.2
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
-0.1
-0.3
-0.0
growth on oleic acid
YNB Glucose
+0.0
-0.1
-0.4
+0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.6
-0.3
-0.0
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.0
+0.2
+0.0
-0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.3
-0.2
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.1
-0.2
-0.0
-0.2
growth on oleic acid
YNB Oleic Acid
+0.1
+0.3
-0.2
+0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
-0.1
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.0
-0.2
+0.5
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.0
-0.1
+0.3
+0.1
growth on ricinoleic acid
YNB Glucose
+0.6
-0.2
-0.2
+0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
+0.1
+0.1
+0.2
auxotrophy
YNB Glucose
-0.0
-0.0
-0.2
+0.3
+0.4
auxotrophy
Dropout Complete
+0.1
-0.1
-0.1
+0.5
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.3
+0.1
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
+0.2
+0.1
+0.1
growth on ypd
YPD
+0.2
+0.1
+0.3
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.5
+0.1
+0.1
+0.1
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