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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15511 and 15512 are separated by 921 nucleotides
15512 and 15513 are separated by 442 nucleotides
15513 and 15514 are separated by 646 nucleotides
15514 and 15515 are separated by 18 nucleotides
mRNA_7143: 15511 - HMMPfam-Protein of unknown function (DUF2421)-PF10334,HMMPfam-Fusaric acid resistance protein-like-PF13515,PRINTS-Brefeldin A-sensitivity protein 4 signature-PR02047,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 984,352 to 987,514
15511
mRNA_7144: 15512 - ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103, at 988,436 to 990,722
15512
mRNA_7145: 15513 - BLAST putative ccch zinc finger dna binding protein [Eu..., at 991,165 to 992,673
15513
mRNA_7146: 15514 - Hypothetical Protein, at 993,320 to 994,345
15514
mRNA_7147: 15515 - Hypothetical Protein, at 994,364 to 995,021
15515
Group
Condition
mRNA
_7143
mRNA
_7144
mRNA
_7145
mRNA
_7146
mRNA
_7147
15511
15512
15513
15514
15515
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.1
-0.7
+0.3
-1.5
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.2
-0.6
-1.0
+0.8
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.3
-0.0
-0.6
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.0
-0.8
+0.5
-0.7
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
-0.1
-0.3
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.0
-0.0
+0.2
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.2
-0.4
+0.7
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.2
+0.2
+0.4
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
+0.2
-0.4
+0.3
growth on ricinoleic acid
YNB Glucose
-0.2
+0.1
-0.0
+0.6
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.0
-0.2
+0.6
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.3
+0.1
+0.6
-0.5
growth on oleic acid
YNB Oleic Acid
-0.2
+0.0
-0.1
+0.8
-0.0
growth on oleic acid
YNB Glucose
-0.4
+0.1
-0.2
+1.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.1
-0.2
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.1
+0.1
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.5
+0.0
+0.9
+0.0
auxotrophy
Dropout Complete
-0.1
+0.5
+0.1
+0.8
+0.1
growth on ypd
YPD
+0.3
+0.0
+0.2
+1.2
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.1
+0.1
+1.0
+0.1
auxotrophy
YNB Glucose
-0.2
+0.3
+0.4
+1.2
-0.0
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