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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15514 and 15515 are separated by 18 nucleotides
15515 and 15516 are separated by 941 nucleotides
15516 and 15517 are separated by 134 nucleotides
15517 and 15518 are separated by 220 nucleotides
mRNA_7146: 15514 - Hypothetical Protein, at 993,320 to 994,345
15514
mRNA_7147: 15515 - Hypothetical Protein, at 994,364 to 995,021
15515
mRNA_7148: 15516 - KOG2246 Galactosyltransferases, at 995,963 to 997,965
15516
mRNA_7149: 15517 - K12733 PPIL1 peptidyl-prolyl cis-trans isomerase-like 1, at 998,100 to 998,920
15517
mRNA_7150: 15518 - K01874 MARS, metG methionyl-tRNA synthetase, at 999,141 to 1,001,312
15518
Group
Condition
mRNA
_7146
mRNA
_7147
mRNA
_7148
mRNA
_7149
mRNA
_7150
15514
15515
15516
15517
15518
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-1.5
-0.9
+0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
+0.8
-0.2
-0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.0
-0.2
+0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
-0.7
-0.4
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.6
+0.2
+0.0
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.1
-0.5
+0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.7
-0.5
-0.4
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.0
-0.2
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.6
-0.5
-0.1
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.3
+0.0
+0.4
N.D.
growth on ricinoleic acid
YNB Glucose
+0.6
-0.3
-0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.1
-0.1
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.1
-0.0
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.0
+0.1
-0.5
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
+0.1
-0.4
+0.3
N.D.
growth on oleic acid
YNB Oleic Acid
+0.8
-0.0
-0.1
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.9
+0.0
-0.1
-0.0
N.D.
auxotrophy
Dropout Complete
+0.8
+0.1
+0.0
+0.3
N.D.
growth on oleic acid
YNB Glucose
+1.1
-0.1
-0.0
+0.3
N.D.
growth on ypd
YPD
+1.2
-0.3
+0.3
+0.1
N.D.
auxotrophy
YNB Glucose
+1.2
-0.0
+0.5
+0.3
N.D.
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