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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15515 and 15516 are separated by 941 nucleotides
15516 and 15517 are separated by 134 nucleotides
15517 and 15518 are separated by 220 nucleotides
15518 and 15519 are separated by 194 nucleotides
mRNA_7147: 15515 - Hypothetical Protein, at 994,364 to 995,021
15515
mRNA_7148: 15516 - KOG2246 Galactosyltransferases, at 995,963 to 997,965
15516
mRNA_7149: 15517 - K12733 PPIL1 peptidyl-prolyl cis-trans isomerase-like 1, at 998,100 to 998,920
15517
mRNA_7150: 15518 - K01874 MARS, metG methionyl-tRNA synthetase, at 999,141 to 1,001,312
15518
mRNA_7151: 15519 - BLAST putative transmembrane protein [Rhizoctonia solani 123E], at 1,001,507 to 1,002,023
15519
Group
Condition
mRNA
_7147
mRNA
_7148
mRNA
_7149
mRNA
_7150
mRNA
_7151
15515
15516
15517
15518
15519
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.5
-0.9
+0.2
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
-0.4
+0.2
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
-0.4
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.5
+0.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.1
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.5
-0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.3
-0.2
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.2
+0.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.1
-0.0
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.0
-0.1
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.2
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.4
+0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.0
+0.2
N.D.
N.D.
growth on ypd
YPD
-0.3
+0.3
+0.1
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.1
-0.0
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
+0.2
N.D.
N.D.
auxotrophy
Dropout Complete
+0.1
+0.0
+0.3
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.8
-0.2
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.0
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.0
+0.4
N.D.
N.D.
auxotrophy
YNB Glucose
-0.0
+0.5
+0.3
N.D.
N.D.
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