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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15523 and 15524 are separated by 2502 nucleotides
15524 and 15525 are separated by 867 nucleotides
15525 and 15526 are separated by 180 nucleotides
15526 and 15527 are separated by 138 nucleotides
mRNA_7155: 15523 - Hypothetical Protein, at 1,007,803 to 1,008,291
15523
mRNA_7156: 15524 - K20102 YTHDF YTH domain-containing family protein, at 1,010,794 to 1,011,457
15524
mRNA_7157: 15525 - KOG2936 Uncharacterized conserved protein, at 1,012,325 to 1,013,982
15525
mRNA_7158: 15526 - K09529 DNAJC9 DnaJ homolog subfamily C member 9, at 1,014,163 to 1,016,901
15526
mRNA_7159: 15527 - HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1,017,040 to 1,019,381
15527
Group
Condition
mRNA
_7155
mRNA
_7156
mRNA
_7157
mRNA
_7158
mRNA
_7159
15523
15524
15525
15526
15527
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-1.2
+0.3
-1.7
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.9
-0.5
-0.8
-0.5
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.0
-0.4
-0.8
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.2
-0.5
-0.2
-0.8
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.1
-0.6
-0.3
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
-0.5
-0.5
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
-0.7
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.0
-0.3
-0.5
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.1
-0.6
-0.0
+0.2
auxotrophy
YNB Glucose
+0.1
+0.4
-0.6
-0.7
-0.1
auxotrophy
Dropout Complete
-0.0
+0.4
-0.6
-0.4
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.2
-0.5
-0.3
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
+1.0
-0.8
-0.2
-0.8
growth on oleic acid
YNB Glucose
+0.6
+0.1
-0.6
+0.1
-0.5
growth on ricinoleic acid
YNB Glucose
+0.5
+0.9
-0.5
-0.5
-0.4
growth on ypd
YPD
+0.4
+0.1
+0.1
-0.6
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.4
+0.1
+0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.2
+0.3
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+1.0
+0.0
-0.4
-0.2
growth on oleic acid
YNB Oleic Acid
+0.4
+0.4
-0.2
+0.5
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.3
+0.2
+0.3
+0.2
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