Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 15524 and 15525 are separated by 867 nucleotides15525 and 15526 are separated by 180 nucleotides15526 and 15527 are separated by 138 nucleotides15527 and 15528 are separated by 242 nucleotides mRNA_7156: 15524 - K20102 YTHDF YTH domain-containing family protein, at 1,010,794 to 1,011,457 15524 mRNA_7157: 15525 - KOG2936 Uncharacterized conserved protein, at 1,012,325 to 1,013,982 15525 mRNA_7158: 15526 - K09529 DNAJC9 DnaJ homolog subfamily C member 9, at 1,014,163 to 1,016,901 15526 mRNA_7159: 15527 - HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1,017,040 to 1,019,381 15527 mRNA_7160: 15528 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1,019,624 to 1,022,322 15528
Group Condition mRNA_7156 mRNA_7157 mRNA_7158 mRNA_7159 mRNA_7160
15524 15525 15526 15527 15528
ypd buoyancy 40 hrs No Buoyancy Separation -1.2 +0.3 -1.7 -0.4 +0.6
growth on ricinoleic acid YNB Ricinoleic Acid +0.2 -0.5 -0.2 -0.8 -0.5
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.5 -0.8 -0.5 -0.0 +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.0 -0.4 -0.8 -0.4 -0.1
auxotrophy YNB Glucose 75mM Methionine +0.1 -0.7 -0.4 -0.2 -0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.0 -0.3 -0.5 -0.1 -0.3
auxotrophy YNB Glucose +0.4 -0.6 -0.7 -0.1 -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid +1.0 -0.8 -0.2 -0.8 -0.3
auxotrophy YNB Glucose 75mM Arginine +0.2 -0.5 -0.3 -0.2 -0.2
facs on lipid accumulation Sorted No BODIPY Gate -0.1 -0.6 -0.3 -0.1 +0.1
growth on ricinoleic acid YNB Glucose +0.9 -0.5 -0.5 -0.4 -0.2
facs on lipid accumulation Sorted High BODIPY Gate -0.5 -0.5 +0.1 +0.2 -0.0
auxotrophy Dropout Complete +0.4 -0.6 -0.4 -0.1 -0.1
growth on oleic acid YNB Glucose +0.1 -0.6 +0.1 -0.5 +0.3
growth on ypd YPD +0.1 +0.1 -0.6 +0.1 -0.2
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 -0.6 -0.0 +0.2 +0.0
growth on oleic acid YNB Oleic Acid +0.4 -0.2 +0.5 -0.3 -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy +1.0 +0.0 -0.4 -0.2 +0.0
ypd buoyancy 40 hrs Median Buoyancy +0.4 +0.1 +0.2 -0.1 -0.0
ypd buoyancy 40 hrs Low Buoyancy +0.2 +0.3 +0.2 -0.1 +0.0
ypd buoyancy 40 hrs High Buoyancy +0.3 +0.2 +0.3 +0.2 +0.0
remove
mRNA_7156
plot
remove
mRNA_7157
plot
remove
mRNA_7158
remove
mRNA_7159
plot
remove
mRNA_7160
plot