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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15525 and 15526 are separated by 180 nucleotides
15526 and 15527 are separated by 138 nucleotides
15527 and 15528 are separated by 242 nucleotides
15528 and 15529 are separated by 270 nucleotides
mRNA_7157: 15525 - KOG2936 Uncharacterized conserved protein, at 1,012,325 to 1,013,982
15525
mRNA_7158: 15526 - K09529 DNAJC9 DnaJ homolog subfamily C member 9, at 1,014,163 to 1,016,901
15526
mRNA_7159: 15527 - HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1,017,040 to 1,019,381
15527
mRNA_7160: 15528 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1,019,624 to 1,022,322
15528
mRNA_7161: 15529 - Hypothetical Protein, at 1,022,593 to 1,024,140
15529
Group
Condition
mRNA
_7157
mRNA
_7158
mRNA
_7159
mRNA
_7160
mRNA
_7161
15525
15526
15527
15528
15529
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.2
-0.8
-0.5
-0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.8
-0.2
-0.8
-0.3
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.3
-0.2
-0.2
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-1.7
-0.4
+0.6
-0.6
auxotrophy
YNB Glucose
-0.6
-0.7
-0.1
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.5
-0.5
-0.4
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.7
-0.4
-0.2
-0.0
-0.1
auxotrophy
Dropout Complete
-0.6
-0.4
-0.1
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.5
-0.1
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.8
-0.4
-0.1
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.8
-0.5
-0.0
+0.1
+0.3
growth on oleic acid
YNB Glucose
-0.6
+0.1
-0.5
+0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
-0.3
-0.1
+0.1
+0.1
growth on ypd
YPD
+0.1
-0.6
+0.1
-0.2
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.0
+0.2
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.4
-0.2
+0.0
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
+0.1
+0.2
-0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.2
-0.1
-0.0
-0.2
growth on oleic acid
YNB Oleic Acid
-0.2
+0.5
-0.3
-0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.3
+0.2
+0.0
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.2
-0.1
+0.0
-0.1
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