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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15526 and 15527 are separated by 138 nucleotides
15527 and 15528 are separated by 242 nucleotides
15528 and 15529 are separated by 270 nucleotides
15529 and 15530 are separated by 1059 nucleotides
mRNA_7158: 15526 - K09529 DNAJC9 DnaJ homolog subfamily C member 9, at 1,014,163 to 1,016,901
15526
mRNA_7159: 15527 - HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1,017,040 to 1,019,381
15527
mRNA_7160: 15528 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1,019,624 to 1,022,322
15528
mRNA_7161: 15529 - Hypothetical Protein, at 1,022,593 to 1,024,140
15529
mRNA_7162: 15530 - ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103, at 1,025,200 to 1,027,264
15530
Group
Condition
mRNA
_7158
mRNA
_7159
mRNA
_7160
mRNA
_7161
mRNA
_7162
15526
15527
15528
15529
15530
ypd buoyancy
40 hrs No Buoyancy Separation
-1.7
-0.4
+0.6
-0.6
-1.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.8
-0.5
-0.7
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.8
-0.3
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.1
-0.3
-0.1
-0.6
growth on ricinoleic acid
YNB Glucose
-0.5
-0.4
-0.2
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.2
-0.2
-0.6
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.8
-0.4
-0.1
+0.5
-0.2
growth on ypd
YPD
-0.6
+0.1
-0.2
+0.0
-0.2
auxotrophy
YNB Glucose
-0.7
-0.1
-0.1
-0.1
+0.3
auxotrophy
Dropout Complete
-0.4
-0.1
-0.1
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.2
+0.0
+0.2
-0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.2
-0.0
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
-0.0
+0.1
+0.3
-0.4
growth on oleic acid
YNB Glucose
+0.1
-0.5
+0.3
-0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
-0.0
-0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.1
+0.1
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
+0.0
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.2
+0.0
-0.4
-0.0
growth on oleic acid
YNB Oleic Acid
+0.5
-0.3
-0.1
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.2
-0.0
+0.1
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.2
+0.0
-0.0
+0.5
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