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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15528 and 15529 are separated by 270 nucleotides
15529 and 15530 are separated by 1059 nucleotides
15530 and 15531 are separated by 175 nucleotides
15531 and 15532 are separated by 141 nucleotides
mRNA_7160: 15528 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1,019,624 to 1,022,322
15528
mRNA_7161: 15529 - Hypothetical Protein, at 1,022,593 to 1,024,140
15529
mRNA_7162: 15530 - ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103, at 1,025,200 to 1,027,264
15530
mRNA_7163: 15531 - Hypothetical Protein, at 1,027,440 to 1,028,287
15531
mRNA_7164: 15532 - K13117 DHX35 ATP-dependent RNA helicase DDX35, at 1,028,429 to 1,031,367
15532
Group
Condition
mRNA
_7160
mRNA
_7161
mRNA
_7162
mRNA
_7163
mRNA
_7164
15528
15529
15530
15531
15532
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
-0.6
-1.1
-0.5
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.7
-0.0
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.1
-0.6
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.6
+0.2
-0.3
-0.0
growth on oleic acid
YNB Glucose
+0.3
-0.1
-0.3
-0.6
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.4
-0.1
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.2
-0.5
-0.3
-0.3
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
-0.1
-0.4
-0.2
growth on ypd
YPD
-0.2
+0.0
-0.2
-0.1
-0.2
auxotrophy
Dropout Complete
-0.1
-0.3
+0.2
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.2
-0.2
-0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
-0.1
-0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.4
-0.0
+0.0
+0.1
growth on ricinoleic acid
YNB Glucose
-0.2
+0.1
-0.2
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.1
+0.2
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.5
-0.2
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.3
-0.4
-0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
+0.1
-0.2
-0.1
auxotrophy
YNB Glucose
-0.1
-0.1
+0.3
+0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.1
+0.2
-0.1
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.0
+0.5
-0.1
+0.2
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