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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15529 and 15530 are separated by 1059 nucleotides
15530 and 15531 are separated by 175 nucleotides
15531 and 15532 are separated by 141 nucleotides
15532 and 15533 are separated by 114 nucleotides
mRNA_7161: 15529 - Hypothetical Protein, at 1,022,593 to 1,024,140
15529
mRNA_7162: 15530 - ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103, at 1,025,200 to 1,027,264
15530
mRNA_7163: 15531 - Hypothetical Protein, at 1,027,440 to 1,028,287
15531
mRNA_7164: 15532 - K13117 DHX35 ATP-dependent RNA helicase DDX35, at 1,028,429 to 1,031,367
15532
mRNA_7165: 15533 - K01867 WARS, trpS tryptophanyl-tRNA synthetase, at 1,031,482 to 1,033,004
15533
Group
Condition
mRNA
_7161
mRNA
_7162
mRNA
_7163
mRNA
_7164
mRNA
_7165
15529
15530
15531
15532
15533
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-1.1
-0.5
-0.2
N.D.
growth on oleic acid
YNB Glucose
-0.1
-0.3
-0.6
-0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
-0.0
-0.1
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.6
-0.2
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.5
-0.3
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.6
+0.2
-0.3
-0.0
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
-0.4
-0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.1
-0.3
+0.1
N.D.
growth on ypd
YPD
+0.0
-0.2
-0.1
-0.2
N.D.
auxotrophy
Dropout Complete
-0.3
+0.2
-0.1
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.2
-0.0
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.0
+0.0
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
-0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.4
-0.1
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
-0.2
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
-0.2
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.2
-0.3
-0.0
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
-0.2
+0.0
+0.1
N.D.
auxotrophy
YNB Glucose
-0.1
+0.3
+0.2
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.2
-0.1
+0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.5
-0.1
+0.2
N.D.
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