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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15530 and 15531 are separated by 175 nucleotides
15531 and 15532 are separated by 141 nucleotides
15532 and 15533 are separated by 114 nucleotides
15533 and 15534 are separated by 152 nucleotides
mRNA_7162: 15530 - ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103, at 1,025,200 to 1,027,264
15530
mRNA_7163: 15531 - Hypothetical Protein, at 1,027,440 to 1,028,287
15531
mRNA_7164: 15532 - K13117 DHX35 ATP-dependent RNA helicase DDX35, at 1,028,429 to 1,031,367
15532
mRNA_7165: 15533 - K01867 WARS, trpS tryptophanyl-tRNA synthetase, at 1,031,482 to 1,033,004
15533
mRNA_7166: 15534 - K01626 E2.5.1.54, aroF, aroG, aroH 3-deoxy-7-phosphoheptulonate synthase, at 1,033,157 to 1,035,237
15534
Group
Condition
mRNA
_7162
mRNA
_7163
mRNA
_7164
mRNA
_7165
mRNA
_7166
15530
15531
15532
15533
15534
ypd buoyancy
40 hrs No Buoyancy Separation
-1.1
-0.5
-0.2
N.D.
+0.2
growth on oleic acid
YNB Glucose
-0.3
-0.6
-0.2
N.D.
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.1
-0.2
N.D.
-0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
-0.3
-0.3
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.4
-0.2
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
-0.2
-0.1
N.D.
+0.2
growth on ypd
YPD
-0.2
-0.1
-0.2
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.3
+0.1
N.D.
-0.4
growth on ricinoleic acid
YNB Glucose
-0.2
+0.0
+0.1
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.3
-0.0
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.1
+0.1
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.2
-0.1
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.3
-0.0
N.D.
-0.1
auxotrophy
Dropout Complete
+0.2
-0.1
-0.1
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.2
+0.1
N.D.
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.1
+0.2
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.2
-0.0
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.0
+0.1
N.D.
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.0
+0.1
N.D.
+0.3
auxotrophy
YNB Glucose
+0.3
+0.2
-0.1
N.D.
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
-0.1
+0.2
N.D.
+0.2
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