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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15532 and 15533 are separated by 114 nucleotides
15533 and 15534 are separated by 152 nucleotides
15534 and 15535 are separated by 177 nucleotides
15535 and 15536 are separated by 192 nucleotides
mRNA_7164: 15532 - K13117 DHX35 ATP-dependent RNA helicase DDX35, at 1,028,429 to 1,031,367
15532
mRNA_7165: 15533 - K01867 WARS, trpS tryptophanyl-tRNA synthetase, at 1,031,482 to 1,033,004
15533
mRNA_7166: 15534 - K01626 E2.5.1.54, aroF, aroG, aroH 3-deoxy-7-phosphoheptulonate synthase, at 1,033,157 to 1,035,237
15534
mRNA_7167: 15535 - ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103, at 1,035,415 to 1,036,383
15535
mRNA_7168: 15536 - HMMPfam-WD domain, G-beta repeat-PF00400,HMMPfam-PFU (PLAA family ubiquitin binding)-PF09070,PRINTS-G protein beta WD-40 repeat signature-PR00320,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,ProSiteProfiles-PFU domain profile.-PS51394,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 1,036,576 to 1,038,409
15536
Group
Condition
mRNA
_7164
mRNA
_7165
mRNA
_7166
mRNA
_7167
mRNA
_7168
15532
15533
15534
15535
15536
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
-0.9
-0.5
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
-0.2
-0.7
+0.1
growth on oleic acid
YNB Oleic Acid
-0.2
N.D.
-0.2
-0.3
-0.1
growth on oleic acid
YNB Glucose
-0.2
N.D.
+0.0
-0.3
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
-0.3
-0.4
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
N.D.
+0.2
-0.2
-0.1
auxotrophy
Dropout Complete
-0.1
N.D.
-0.1
+0.0
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
N.D.
-0.4
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
N.D.
+0.2
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.0
N.D.
-0.1
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
N.D.
+0.1
+0.1
-0.0
growth on ypd
YPD
-0.2
N.D.
-0.1
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
N.D.
+0.2
+0.0
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
N.D.
-0.3
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
+0.2
+0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
+0.3
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
+0.1
+0.0
-0.1
auxotrophy
YNB Glucose
-0.1
N.D.
+0.2
+0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
+0.2
+0.0
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
+0.4
+0.1
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
N.D.
+0.2
+0.4
-0.0
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