Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 15532 and 15533 are separated by 114 nucleotides15533 and 15534 are separated by 152 nucleotides15534 and 15535 are separated by 177 nucleotides15535 and 15536 are separated by 192 nucleotides mRNA_7164: 15532 - K13117 DHX35 ATP-dependent RNA helicase DDX35, at 1,028,429 to 1,031,367 15532 mRNA_7165: 15533 - K01867 WARS, trpS tryptophanyl-tRNA synthetase, at 1,031,482 to 1,033,004 15533 mRNA_7166: 15534 - K01626 E2.5.1.54, aroF, aroG, aroH 3-deoxy-7-phosphoheptulonate synthase, at 1,033,157 to 1,035,237 15534 mRNA_7167: 15535 - ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103, at 1,035,415 to 1,036,383 15535 mRNA_7168: 15536 - HMMPfam-WD domain, G-beta repeat-PF00400,HMMPfam-PFU (PLAA family ubiquitin binding)-PF09070,PRINTS-G protein beta WD-40 repeat signature-PR00320,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,ProSiteProfiles-PFU domain profile.-PS51394,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 1,036,576 to 1,038,409 15536
Group Condition mRNA_7164 mRNA_7165 mRNA_7166 mRNA_7167 mRNA_7168
15532 15533 15534 15535 15536
growth on ricinoleic acid YNB Ricinoleic Acid -0.2 N.D. -0.9 -0.5 +0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.1 N.D. -0.2 -0.7 +0.1
growth on oleic acid YNB Oleic Acid -0.2 N.D. -0.2 -0.3 -0.1
growth on oleic acid YNB Glucose -0.2 N.D. +0.0 -0.3 -0.1
growth on ricinoleic acid YNB Glucose +0.1 N.D. -0.3 -0.4 +0.0
ypd buoyancy 40 hrs No Buoyancy Separation -0.2 N.D. +0.2 -0.2 -0.1
auxotrophy Dropout Complete -0.1 N.D. -0.1 +0.0 -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid +0.1 N.D. -0.4 -0.2 +0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.0 N.D. +0.2 -0.2 -0.2
auxotrophy YNB Glucose 75mM Arginine -0.0 N.D. -0.1 +0.0 -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.3 N.D. +0.1 +0.1 -0.0
growth on ypd YPD -0.2 N.D. -0.1 +0.1 +0.1
auxotrophy YNB Glucose 75mM Methionine -0.0 N.D. +0.2 +0.0 -0.2
facs on lipid accumulation Sorted High BODIPY Gate +0.2 N.D. -0.3 -0.1 +0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 N.D. +0.2 +0.1 -0.2
ypd buoyancy 40 hrs High Buoyancy +0.1 N.D. +0.3 -0.2 -0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.1 N.D. +0.1 +0.0 -0.1
auxotrophy YNB Glucose -0.1 N.D. +0.2 +0.1 +0.0
ypd buoyancy 40 hrs Low Buoyancy +0.1 N.D. +0.2 +0.0 -0.0
ypd buoyancy 40 hrs Median Buoyancy +0.1 N.D. +0.4 +0.1 -0.0
facs on lipid accumulation Sorted Low BODIPY Gate +0.2 N.D. +0.2 +0.4 -0.0
remove
mRNA_7164
plot
remove
mRNA_7165
plot
remove
mRNA_7166
remove
mRNA_7167
plot
remove
mRNA_7168
plot