Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
15533 and 15534 are separated by 152 nucleotides
15534 and 15535 are separated by 177 nucleotides
15535 and 15536 are separated by 192 nucleotides
15536 and 15537 are separated by 256 nucleotides
mRNA_7165: 15533 - K01867 WARS, trpS tryptophanyl-tRNA synthetase, at 1,031,482 to 1,033,004
15533
mRNA_7166: 15534 - K01626 E2.5.1.54, aroF, aroG, aroH 3-deoxy-7-phosphoheptulonate synthase, at 1,033,157 to 1,035,237
15534
mRNA_7167: 15535 - ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103, at 1,035,415 to 1,036,383
15535
mRNA_7168: 15536 - HMMPfam-WD domain, G-beta repeat-PF00400,HMMPfam-PFU (PLAA family ubiquitin binding)-PF09070,PRINTS-G protein beta WD-40 repeat signature-PR00320,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,ProSiteProfiles-PFU domain profile.-PS51394,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 1,036,576 to 1,038,409
15536
mRNA_7169: 15537 - K13137 STRAP, UNRIP serine-threonine kinase receptor-associated protein, at 1,038,666 to 1,040,206
15537
Group
Condition
mRNA
_7165
mRNA
_7166
mRNA
_7167
mRNA
_7168
mRNA
_7169
15533
15534
15535
15536
15537
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
-0.7
+0.1
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
+0.1
-0.2
-1.6
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.3
-0.1
+0.1
-1.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
+0.1
-0.0
-1.6
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.2
-0.2
-0.1
-1.2
growth on ricinoleic acid
YNB Glucose
N.D.
-0.3
-0.4
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
+0.0
-0.1
-1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.9
-0.5
+0.1
+0.5
growth on ypd
YPD
N.D.
-0.1
+0.1
+0.1
-0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
-0.2
-0.2
-0.6
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.3
-0.2
-0.1
-0.6
growth on oleic acid
YNB Glucose
N.D.
+0.0
-0.3
-0.1
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
-0.3
-0.1
+0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.4
-0.2
+0.2
+0.8
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.4
+0.1
-0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
+0.0
-0.0
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
+0.4
-0.0
-0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
+0.0
-0.1
+1.2
auxotrophy
Dropout Complete
N.D.
-0.1
+0.0
-0.1
+1.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
+0.0
-0.2
+1.2
auxotrophy
YNB Glucose
N.D.
+0.2
+0.1
+0.0
+1.0
remove
mRNA_7165
plot
remove
mRNA_7166
plot
remove
mRNA_7167
remove
mRNA_7168
plot
remove
mRNA_7169
plot