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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15534 and 15535 are separated by 177 nucleotides
15535 and 15536 are separated by 192 nucleotides
15536 and 15537 are separated by 256 nucleotides
15537 and 15538 are separated by 254 nucleotides
mRNA_7166: 15534 - K01626 E2.5.1.54, aroF, aroG, aroH 3-deoxy-7-phosphoheptulonate synthase, at 1,033,157 to 1,035,237
15534
mRNA_7167: 15535 - ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103, at 1,035,415 to 1,036,383
15535
mRNA_7168: 15536 - HMMPfam-WD domain, G-beta repeat-PF00400,HMMPfam-PFU (PLAA family ubiquitin binding)-PF09070,PRINTS-G protein beta WD-40 repeat signature-PR00320,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,ProSiteProfiles-PFU domain profile.-PS51394,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 1,036,576 to 1,038,409
15536
mRNA_7169: 15537 - K13137 STRAP, UNRIP serine-threonine kinase receptor-associated protein, at 1,038,666 to 1,040,206
15537
mRNA_7170: 15538 - Hypothetical Protein, at 1,040,461 to 1,043,299
15538
Group
Condition
mRNA
_7166
mRNA
_7167
mRNA
_7168
mRNA
_7169
mRNA
_7170
15534
15535
15536
15537
15538
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.1
-0.2
-1.6
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.1
-0.0
-1.6
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.2
-0.1
-1.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.0
-0.1
-1.0
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.2
-0.2
-0.6
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.7
+0.1
-0.7
+0.4
growth on ypd
YPD
-0.1
+0.1
+0.1
-0.9
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
-0.5
+0.1
+0.5
+0.1
growth on ricinoleic acid
YNB Glucose
-0.3
-0.4
+0.0
-0.3
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.2
-0.1
-0.6
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.1
+0.1
-1.3
+0.8
growth on oleic acid
YNB Glucose
+0.0
-0.3
-0.1
+0.2
+0.3
growth on oleic acid
YNB Oleic Acid
-0.2
-0.3
-0.1
+0.7
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.1
-0.0
+0.1
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.2
+0.2
+0.8
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.0
-0.0
+0.4
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.4
-0.0
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.0
-0.1
+1.2
+0.2
auxotrophy
Dropout Complete
-0.1
+0.0
-0.1
+1.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.0
-0.2
+1.2
+0.3
auxotrophy
YNB Glucose
+0.2
+0.1
+0.0
+1.0
+0.3
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