Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 15534 and 15535 are separated by 177 nucleotides15535 and 15536 are separated by 192 nucleotides15536 and 15537 are separated by 256 nucleotides15537 and 15538 are separated by 254 nucleotides mRNA_7166: 15534 - K01626 E2.5.1.54, aroF, aroG, aroH 3-deoxy-7-phosphoheptulonate synthase, at 1,033,157 to 1,035,237 15534 mRNA_7167: 15535 - ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103, at 1,035,415 to 1,036,383 15535 mRNA_7168: 15536 - HMMPfam-WD domain, G-beta repeat-PF00400,HMMPfam-PFU (PLAA family ubiquitin binding)-PF09070,PRINTS-G protein beta WD-40 repeat signature-PR00320,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,ProSiteProfiles-PFU domain profile.-PS51394,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 1,036,576 to 1,038,409 15536 mRNA_7169: 15537 - K13137 STRAP, UNRIP serine-threonine kinase receptor-associated protein, at 1,038,666 to 1,040,206 15537 mRNA_7170: 15538 - Hypothetical Protein, at 1,040,461 to 1,043,299 15538
Group Condition mRNA_7166 mRNA_7167 mRNA_7168 mRNA_7169 mRNA_7170
15534 15535 15536 15537 15538
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.2 +0.1 -0.2 -1.6 -0.5
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.1 +0.1 -0.0 -1.6 -0.3
ypd buoyancy 40 hrs No Buoyancy Separation +0.2 -0.2 -0.1 -1.2 -0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.1 +0.0 -0.1 -1.0 -0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.2 -0.2 -0.2 -0.6 -0.3
facs on lipid accumulation Sorted No BODIPY Gate -0.2 -0.7 +0.1 -0.7 +0.4
growth on ypd YPD -0.1 +0.1 +0.1 -0.9 -0.2
growth on ricinoleic acid YNB Ricinoleic Acid -0.9 -0.5 +0.1 +0.5 +0.1
growth on ricinoleic acid YNB Glucose -0.3 -0.4 +0.0 -0.3 +0.2
ypd buoyancy 40 hrs High Buoyancy +0.3 -0.2 -0.1 -0.6 -0.2
facs on lipid accumulation Sorted High BODIPY Gate -0.3 -0.1 +0.1 -1.3 +0.8
growth on oleic acid YNB Glucose +0.0 -0.3 -0.1 +0.2 +0.3
growth on oleic acid YNB Oleic Acid -0.2 -0.3 -0.1 +0.7 +0.3
ypd buoyancy 40 hrs Median Buoyancy +0.4 +0.1 -0.0 +0.1 +0.0
growth on ricinoleic acid YNB Methylricinoleic Acid -0.4 -0.2 +0.2 +0.8 +0.2
ypd buoyancy 40 hrs Low Buoyancy +0.2 +0.0 -0.0 +0.4 +0.0
facs on lipid accumulation Sorted Low BODIPY Gate +0.2 +0.4 -0.0 -0.0 +0.2
auxotrophy YNB Glucose 75mM Arginine -0.1 +0.0 -0.1 +1.2 +0.2
auxotrophy Dropout Complete -0.1 +0.0 -0.1 +1.3 +0.1
auxotrophy YNB Glucose 75mM Methionine +0.2 +0.0 -0.2 +1.2 +0.3
auxotrophy YNB Glucose +0.2 +0.1 +0.0 +1.0 +0.3
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