Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 15535 and 15536 are separated by 192 nucleotides15536 and 15537 are separated by 256 nucleotides15537 and 15538 are separated by 254 nucleotides15538 and 15539 are separated by 254 nucleotides mRNA_7167: 15535 - ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103, at 1,035,415 to 1,036,383 15535 mRNA_7168: 15536 - HMMPfam-WD domain, G-beta repeat-PF00400,HMMPfam-PFU (PLAA family ubiquitin binding)-PF09070,PRINTS-G protein beta WD-40 repeat signature-PR00320,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,ProSiteProfiles-PFU domain profile.-PS51394,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 1,036,576 to 1,038,409 15536 mRNA_7169: 15537 - K13137 STRAP, UNRIP serine-threonine kinase receptor-associated protein, at 1,038,666 to 1,040,206 15537 mRNA_7170: 15538 - Hypothetical Protein, at 1,040,461 to 1,043,299 15538 mRNA_7171: 15539 - Hypothetical Protein, at 1,043,554 to 1,044,696 15539
Group Condition mRNA_7167 mRNA_7168 mRNA_7169 mRNA_7170 mRNA_7171
15535 15536 15537 15538 15539
ypd buoyancy 40 hrs No Buoyancy Separation -0.2 -0.1 -1.2 -0.1 -1.4
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 -0.2 -0.6 -0.3 -1.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.1 -0.2 -1.6 -0.5 -0.3
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.0 -0.1 -1.0 -0.2 -0.9
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.1 -0.0 -1.6 -0.3 -0.3
ypd buoyancy 40 hrs High Buoyancy -0.2 -0.1 -0.6 -0.2 -0.4
growth on ypd YPD +0.1 +0.1 -0.9 -0.2 +0.0
growth on ricinoleic acid YNB Glucose -0.4 +0.0 -0.3 +0.2 -0.4
facs on lipid accumulation Sorted No BODIPY Gate -0.7 +0.1 -0.7 +0.4 +0.3
ypd buoyancy 40 hrs Median Buoyancy +0.1 -0.0 +0.1 +0.0 -0.3
ypd buoyancy 40 hrs Low Buoyancy +0.0 -0.0 +0.4 +0.0 -0.5
growth on oleic acid YNB Glucose -0.3 -0.1 +0.2 +0.3 -0.1
growth on ricinoleic acid YNB Ricinoleic Acid -0.5 +0.1 +0.5 +0.1 -0.0
facs on lipid accumulation Sorted High BODIPY Gate -0.1 +0.1 -1.3 +0.8 +0.4
facs on lipid accumulation Sorted Low BODIPY Gate +0.4 -0.0 -0.0 +0.2 -0.4
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2 +0.2 +0.8 +0.2 -0.7
growth on oleic acid YNB Oleic Acid -0.3 -0.1 +0.7 +0.3 +0.6
auxotrophy Dropout Complete +0.0 -0.1 +1.3 +0.1 +0.0
auxotrophy YNB Glucose 75mM Methionine +0.0 -0.2 +1.2 +0.3 +0.4
auxotrophy YNB Glucose 75mM Arginine +0.0 -0.1 +1.2 +0.2 +0.5
auxotrophy YNB Glucose +0.1 +0.0 +1.0 +0.3 +0.5
remove
mRNA_7167
plot
remove
mRNA_7168
plot
remove
mRNA_7169
remove
mRNA_7170
plot
remove
mRNA_7171
plot