Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 15536 and 15537 are separated by 256 nucleotides15537 and 15538 are separated by 254 nucleotides15538 and 15539 are separated by 254 nucleotides15539 and 15540 are separated by 628 nucleotides mRNA_7168: 15536 - HMMPfam-WD domain, G-beta repeat-PF00400,HMMPfam-PFU (PLAA family ubiquitin binding)-PF09070,PRINTS-G protein beta WD-40 repeat signature-PR00320,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,ProSiteProfiles-PFU domain profile.-PS51394,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 1,036,576 to 1,038,409 15536 mRNA_7169: 15537 - K13137 STRAP, UNRIP serine-threonine kinase receptor-associated protein, at 1,038,666 to 1,040,206 15537 mRNA_7170: 15538 - Hypothetical Protein, at 1,040,461 to 1,043,299 15538 mRNA_7171: 15539 - Hypothetical Protein, at 1,043,554 to 1,044,696 15539 mRNA_7172: 15540 - K01408 IDE, ide insulysin, at 1,045,325 to 1,049,371 15540
Group Condition mRNA_7168 mRNA_7169 mRNA_7170 mRNA_7171 mRNA_7172
15536 15537 15538 15539 15540
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2 -1.6 -0.5 -0.3 +0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 -0.6 -0.3 -1.3 +0.1
ypd buoyancy 40 hrs No Buoyancy Separation -0.1 -1.2 -0.1 -1.4 +0.6
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.0 -1.6 -0.3 -0.3 +0.3
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 -1.0 -0.2 -0.9 +0.3
ypd buoyancy 40 hrs High Buoyancy -0.1 -0.6 -0.2 -0.4 +0.4
growth on ypd YPD +0.1 -0.9 -0.2 +0.0 +0.1
growth on ricinoleic acid YNB Glucose +0.0 -0.3 +0.2 -0.4 -0.0
facs on lipid accumulation Sorted Low BODIPY Gate -0.0 -0.0 +0.2 -0.4 -0.2
ypd buoyancy 40 hrs Median Buoyancy -0.0 +0.1 +0.0 -0.3 +0.2
growth on ricinoleic acid YNB Ricinoleic Acid +0.1 +0.5 +0.1 -0.0 -0.5
ypd buoyancy 40 hrs Low Buoyancy -0.0 +0.4 +0.0 -0.5 +0.2
growth on oleic acid YNB Glucose -0.1 +0.2 +0.3 -0.1 -0.0
facs on lipid accumulation Sorted High BODIPY Gate +0.1 -1.3 +0.8 +0.4 +0.1
facs on lipid accumulation Sorted No BODIPY Gate +0.1 -0.7 +0.4 +0.3 +0.1
growth on ricinoleic acid YNB Methylricinoleic Acid +0.2 +0.8 +0.2 -0.7 -0.1
auxotrophy Dropout Complete -0.1 +1.3 +0.1 +0.0 -0.3
growth on oleic acid YNB Oleic Acid -0.1 +0.7 +0.3 +0.6 -0.1
auxotrophy YNB Glucose 75mM Methionine -0.2 +1.2 +0.3 +0.4 -0.2
auxotrophy YNB Glucose 75mM Arginine -0.1 +1.2 +0.2 +0.5 +0.0
auxotrophy YNB Glucose +0.0 +1.0 +0.3 +0.5 +0.1
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