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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15538 and 15539 are separated by 254 nucleotides
15539 and 15540 are separated by 628 nucleotides
15540 and 15541 are separated by 320 nucleotides
15541 and 15542 are separated by 392 nucleotides
mRNA_7170: 15538 - Hypothetical Protein, at 1,040,461 to 1,043,299
15538
mRNA_7171: 15539 - Hypothetical Protein, at 1,043,554 to 1,044,696
15539
mRNA_7172: 15540 - K01408 IDE, ide insulysin, at 1,045,325 to 1,049,371
15540
mRNA_7173: 15541 - K02891 RP-L22e, RPL22 large subunit ribosomal protein L22e, at 1,049,692 to 1,050,738
15541
mRNA_7174: 15542 - K11131 DKC1, NOLA4, CBF5 H/ACA ribonucleoprotein complex subunit 4, at 1,051,131 to 1,053,156
15542
Group
Condition
mRNA
_7170
mRNA
_7171
mRNA
_7172
mRNA
_7173
mRNA
_7174
15538
15539
15540
15541
15542
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-1.3
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-1.4
+0.6
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.9
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.3
+0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.7
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.0
-0.5
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.4
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.3
+0.3
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.5
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.4
+0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
-0.4
-0.0
N.D.
N.D.
auxotrophy
Dropout Complete
+0.1
+0.0
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.3
+0.2
N.D.
N.D.
growth on ypd
YPD
-0.2
+0.0
+0.1
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.3
-0.1
-0.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.4
-0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.5
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.3
+0.1
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.3
+0.6
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose
+0.3
+0.5
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.8
+0.4
+0.1
N.D.
N.D.
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