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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15542 and 15543 are separated by 419 nucleotides
15543 and 15544 are separated by 220 nucleotides
15544 and 15545 are separated by 284 nucleotides
15545 and 15546 are separated by 172 nucleotides
mRNA_7174: 15542 - K11131 DKC1, NOLA4, CBF5 H/ACA ribonucleoprotein complex subunit 4, at 1,051,131 to 1,053,156
15542
mRNA_7175: 15543 - K12272 SRPRB, SRP102 signal recognition particle receptor subunit beta, at 1,053,576 to 1,055,087
15543
mRNA_7176: 15544 - KOG4635 Vacuolar import and degradation protein, at 1,055,308 to 1,056,885
15544
mRNA_7177: 15545 - KOG0565 Inositol polyphosphate 5-phosphatase and related proteins, at 1,057,170 to 1,058,665
15545
mRNA_7178: 15546 - KOG0417 Ubiquitin-protein ligase, at 1,058,838 to 1,059,935
15546
Group
Condition
mRNA
_7174
mRNA
_7175
mRNA
_7176
mRNA
_7177
mRNA
_7178
15542
15543
15544
15545
15546
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.4
-0.1
-4.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.2
+0.1
-2.6
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.5
-0.4
-1.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.4
-0.4
-1.4
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.2
-0.2
-2.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.5
-0.2
-1.4
auxotrophy
Dropout Complete
N.D.
N.D.
-0.2
-0.4
-0.9
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.5
-0.4
-0.6
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.6
+0.2
-0.8
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.0
-0.3
-0.8
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.6
-0.0
-0.4
auxotrophy
YNB Glucose
N.D.
N.D.
-0.1
+0.2
-1.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.1
+0.1
-0.9
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.4
-0.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.1
+0.1
-0.8
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.6
+0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.2
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.0
+0.6
-0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.2
+0.4
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.4
+0.5
+0.1
growth on ypd
YPD
N.D.
N.D.
+0.5
-0.0
+0.4
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