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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15544 and 15545 are separated by 284 nucleotides
15545 and 15546 are separated by 172 nucleotides
15546 and 15547 are separated by 404 nucleotides
15547 and 15548 are separated by 829 nucleotides
mRNA_7176: 15544 - KOG4635 Vacuolar import and degradation protein, at 1,055,308 to 1,056,885
15544
mRNA_7177: 15545 - KOG0565 Inositol polyphosphate 5-phosphatase and related proteins, at 1,057,170 to 1,058,665
15545
mRNA_7178: 15546 - KOG0417 Ubiquitin-protein ligase, at 1,058,838 to 1,059,935
15546
mRNA_7179: 15547 - Hypothetical Protein, at 1,060,340 to 1,061,881
15547
mRNA_7180: 15548 - Hypothetical Protein, at 1,062,711 to 1,064,267
15548
Group
Condition
mRNA
_7176
mRNA
_7177
mRNA
_7178
mRNA
_7179
mRNA
_7180
15544
15545
15546
15547
15548
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.1
-4.0
+0.2
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.2
-2.1
-0.2
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.1
-2.6
-0.3
+0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.4
-1.4
+0.2
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.2
-1.4
-0.1
+0.7
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
-0.2
-0.6
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.0
-0.2
-0.7
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.4
-1.4
+0.5
+0.5
growth on oleic acid
YNB Glucose
-0.6
+0.2
-0.8
+0.0
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
-0.9
-0.0
-0.1
auxotrophy
Dropout Complete
-0.2
-0.4
-0.9
+0.2
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
-0.8
-0.2
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.4
-0.6
-0.1
+0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.6
-0.8
-0.4
-0.0
growth on oleic acid
YNB Oleic Acid
-0.6
+0.2
-0.2
+0.2
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.3
-0.8
+0.5
+0.3
auxotrophy
YNB Glucose
-0.1
+0.2
-1.0
+0.3
+0.5
growth on ricinoleic acid
YNB Glucose
-0.6
-0.0
-0.4
+0.2
+0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.5
+0.1
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.4
-0.4
-0.3
+0.4
growth on ypd
YPD
+0.5
-0.0
+0.4
-0.0
+0.0
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