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Cofit
Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15546 and 15547 are separated by 404 nucleotides
15547 and 15548 are separated by 829 nucleotides
15548 and 15549 are separated by 495 nucleotides
15549 and 15550 are separated by 251 nucleotides
mRNA_7178: 15546 - KOG0417 Ubiquitin-protein ligase, at 1,058,838 to 1,059,935
15546
mRNA_7179: 15547 - Hypothetical Protein, at 1,060,340 to 1,061,881
15547
mRNA_7180: 15548 - Hypothetical Protein, at 1,062,711 to 1,064,267
15548
mRNA_7181: 15549 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 1,064,763 to 1,065,253
15549
mRNA_7182: 15550 - HMMPfam-WD domain, G-beta repeat-PF00400,ProSitePatterns-Trp-Asp (WD) repeats signature.-PS00678,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 1,065,505 to 1,067,037
15550
Group
Condition
mRNA
_7178
mRNA
_7179
mRNA
_7180
mRNA
_7181
mRNA
_7182
15546
15547
15548
15549
15550
facs on lipid accumulation
Sorted No BODIPY Gate
-2.6
-0.3
+0.5
+0.0
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-4.0
+0.2
+0.3
+0.5
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-2.1
-0.2
-0.4
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-1.4
+0.2
+0.0
-0.0
-0.3
growth on oleic acid
YNB Glucose
-0.8
+0.0
-0.0
-0.3
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.9
-0.0
-0.1
+0.0
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.6
-0.2
+0.4
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.8
-0.4
-0.0
+0.1
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.4
-0.1
+0.7
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.7
+0.0
-0.0
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-1.4
+0.5
+0.5
+0.2
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.8
-0.2
-0.0
+0.4
+0.3
growth on oleic acid
YNB Oleic Acid
-0.2
+0.2
+0.0
-0.2
-0.1
growth on ypd
YPD
+0.4
-0.0
+0.0
-0.1
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.3
+0.4
-0.0
+0.2
auxotrophy
YNB Glucose
-1.0
+0.3
+0.5
+0.2
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
-0.1
+0.9
-0.1
-0.1
auxotrophy
Dropout Complete
-0.9
+0.2
+0.4
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.8
+0.5
+0.3
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.2
-0.1
-0.1
+0.5
growth on ricinoleic acid
YNB Glucose
-0.4
+0.2
+0.6
+0.0
-0.1
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