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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15548 and 15549 are separated by 495 nucleotides
15549 and 15550 are separated by 251 nucleotides
15550 and 15551 are separated by 1117 nucleotides
15551 and 15552 are separated by 520 nucleotides
mRNA_7180: 15548 - Hypothetical Protein, at 1,062,711 to 1,064,267
15548
mRNA_7181: 15549 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 1,064,763 to 1,065,253
15549
mRNA_7182: 15550 - HMMPfam-WD domain, G-beta repeat-PF00400,ProSitePatterns-Trp-Asp (WD) repeats signature.-PS00678,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 1,065,505 to 1,067,037
15550
mRNA_7183: 15551 - Hypothetical Protein, at 1,068,155 to 1,071,791
15551
mRNA_7184: 15552 - K02219 CKS1 cyclin-dependent kinase regulatory subunit CKS1, at 1,072,312 to 1,073,593
15552
Group
Condition
mRNA
_7180
mRNA
_7181
mRNA
_7182
mRNA
_7183
mRNA
_7184
15548
15549
15550
15551
15552
growth on oleic acid
YNB Glucose
-0.0
-0.3
-0.3
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.4
-0.2
-0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
+0.0
-0.6
-0.1
-0.2
growth on ypd
YPD
+0.0
-0.1
-0.6
-0.3
+0.6
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.0
-0.3
-0.0
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+0.1
+0.0
+0.0
-0.0
growth on oleic acid
YNB Oleic Acid
+0.0
-0.2
-0.1
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.1
+0.5
-0.1
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
-0.1
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.0
+0.2
-0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.9
-0.1
-0.1
+0.1
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
+0.2
-0.5
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.1
+0.4
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.0
+0.1
-0.0
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.5
+0.1
-0.0
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
+0.2
-0.0
+0.1
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.4
+0.3
-0.0
-0.1
auxotrophy
Dropout Complete
+0.4
+0.1
+0.3
-0.3
+0.0
growth on ricinoleic acid
YNB Glucose
+0.6
+0.0
-0.1
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.0
+0.2
+0.0
+0.1
auxotrophy
YNB Glucose
+0.5
+0.2
-0.0
-0.0
+0.2
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