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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15549 and 15550 are separated by 251 nucleotides
15550 and 15551 are separated by 1117 nucleotides
15551 and 15552 are separated by 520 nucleotides
15552 and 15553 are separated by 140 nucleotides
mRNA_7181: 15549 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 1,064,763 to 1,065,253
15549
mRNA_7182: 15550 - HMMPfam-WD domain, G-beta repeat-PF00400,ProSitePatterns-Trp-Asp (WD) repeats signature.-PS00678,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 1,065,505 to 1,067,037
15550
mRNA_7183: 15551 - Hypothetical Protein, at 1,068,155 to 1,071,791
15551
mRNA_7184: 15552 - K02219 CKS1 cyclin-dependent kinase regulatory subunit CKS1, at 1,072,312 to 1,073,593
15552
mRNA_7185: 15553 - K07300 chaA, CAX Ca2+-H+ antiporter, at 1,073,734 to 1,075,504
15553
Group
Condition
mRNA
_7181
mRNA
_7182
mRNA
_7183
mRNA
_7184
mRNA
_7185
15549
15550
15551
15552
15553
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.6
-0.1
-0.2
-1.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.5
-0.1
-0.0
-1.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.1
+0.1
-0.6
-0.3
growth on oleic acid
YNB Glucose
-0.3
-0.3
-0.1
-0.1
-0.2
growth on ypd
YPD
-0.1
-0.6
-0.3
+0.6
+0.0
growth on oleic acid
YNB Oleic Acid
-0.2
-0.1
+0.1
-0.1
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
+0.1
-0.0
-0.5
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.2
-0.0
-0.1
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.1
-0.0
+0.0
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.3
-0.0
-0.0
+0.3
auxotrophy
Dropout Complete
+0.1
+0.3
-0.3
+0.0
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.0
+0.1
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.2
+0.0
+0.1
-0.2
growth on ricinoleic acid
YNB Glucose
+0.0
-0.1
+0.1
-0.1
+0.1
auxotrophy
YNB Glucose
+0.2
-0.0
-0.0
+0.2
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.4
-0.2
-0.1
-0.2
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.5
-0.1
-0.4
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.4
-0.2
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
+0.1
-0.1
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.0
+0.0
-0.0
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.3
-0.0
-0.1
+0.4
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