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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15550 and 15551 are separated by 1117 nucleotides
15551 and 15552 are separated by 520 nucleotides
15552 and 15553 are separated by 140 nucleotides
15553 and 15554 are separated by 670 nucleotides
mRNA_7182: 15550 - HMMPfam-WD domain, G-beta repeat-PF00400,ProSitePatterns-Trp-Asp (WD) repeats signature.-PS00678,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 1,065,505 to 1,067,037
15550
mRNA_7183: 15551 - Hypothetical Protein, at 1,068,155 to 1,071,791
15551
mRNA_7184: 15552 - K02219 CKS1 cyclin-dependent kinase regulatory subunit CKS1, at 1,072,312 to 1,073,593
15552
mRNA_7185: 15553 - K07300 chaA, CAX Ca2+-H+ antiporter, at 1,073,734 to 1,075,504
15553
mRNA_7186: 15554 - HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 1,076,175 to 1,077,434
15554
Group
Condition
mRNA
_7182
mRNA
_7183
mRNA
_7184
mRNA
_7185
mRNA
_7186
15550
15551
15552
15553
15554
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
-0.1
-0.2
-1.2
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.1
-0.0
-1.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.0
-0.1
-0.4
-1.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.0
-0.5
-0.4
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.1
-0.6
-0.3
-0.1
auxotrophy
Dropout Complete
+0.3
-0.3
+0.0
-0.2
-0.6
growth on oleic acid
YNB Glucose
-0.3
-0.1
-0.1
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.0
-0.0
+0.3
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.2
+0.1
-0.1
-0.7
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
-0.2
+0.4
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.0
-0.0
+0.2
-0.6
auxotrophy
YNB Glucose
-0.0
-0.0
+0.2
-0.3
-0.2
growth on ypd
YPD
-0.6
-0.3
+0.6
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.0
+0.1
-0.2
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
-0.1
+0.4
-0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.0
+0.0
-0.2
+0.0
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
-0.1
-0.0
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
-0.1
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.1
-0.4
+0.3
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.1
-0.4
+0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.0
-0.1
+0.4
-0.2
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