Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 15550 and 15551 are separated by 1117 nucleotides15551 and 15552 are separated by 520 nucleotides15552 and 15553 are separated by 140 nucleotides15553 and 15554 are separated by 670 nucleotides mRNA_7182: 15550 - HMMPfam-WD domain, G-beta repeat-PF00400,ProSitePatterns-Trp-Asp (WD) repeats signature.-PS00678,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 1,065,505 to 1,067,037 15550 mRNA_7183: 15551 - Hypothetical Protein, at 1,068,155 to 1,071,791 15551 mRNA_7184: 15552 - K02219 CKS1 cyclin-dependent kinase regulatory subunit CKS1, at 1,072,312 to 1,073,593 15552 mRNA_7185: 15553 - K07300 chaA, CAX Ca2+-H+ antiporter, at 1,073,734 to 1,075,504 15553 mRNA_7186: 15554 - HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 1,076,175 to 1,077,434 15554
Group Condition mRNA_7182 mRNA_7183 mRNA_7184 mRNA_7185 mRNA_7186
15550 15551 15552 15553 15554
facs on lipid accumulation Sorted No BODIPY Gate -0.6 -0.1 -0.2 -1.2 -0.3
facs on lipid accumulation Sorted High BODIPY Gate -0.5 -0.1 -0.0 -1.1 -0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.2 -0.0 -0.1 -0.4 -1.1
facs on lipid accumulation Sorted Low BODIPY Gate +0.1 -0.0 -0.5 -0.4 -0.3
growth on ricinoleic acid YNB Ricinoleic Acid -0.1 +0.1 -0.6 -0.3 -0.1
auxotrophy Dropout Complete +0.3 -0.3 +0.0 -0.2 -0.6
growth on oleic acid YNB Glucose -0.3 -0.1 -0.1 -0.2 -0.2
auxotrophy YNB Glucose 75mM Methionine -0.3 -0.0 -0.0 +0.3 -0.6
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.4 -0.2 +0.1 -0.1 -0.7
ypd buoyancy 40 hrs Median Buoyancy -0.2 -0.1 -0.2 +0.4 -0.3
ypd buoyancy 40 hrs No Buoyancy Separation +0.0 +0.0 -0.0 +0.2 -0.6
auxotrophy YNB Glucose -0.0 -0.0 +0.2 -0.3 -0.2
growth on ypd YPD -0.6 -0.3 +0.6 +0.0 -0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.2 +0.0 +0.1 -0.2 -0.3
ypd buoyancy 40 hrs Low Buoyancy -0.1 +0.1 -0.1 +0.4 -0.6
auxotrophy YNB Glucose 75mM Arginine +0.1 -0.0 +0.0 -0.2 +0.0
growth on oleic acid YNB Oleic Acid -0.1 +0.1 -0.1 -0.0 -0.1
growth on ricinoleic acid YNB Glucose -0.1 +0.1 -0.1 +0.1 -0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.5 -0.1 -0.4 +0.3 -0.3
growth on ricinoleic acid YNB Methylricinoleic Acid -0.0 +0.1 -0.4 +0.1 +0.2
ypd buoyancy 40 hrs High Buoyancy +0.3 -0.0 -0.1 +0.4 -0.2
remove
mRNA_7182
plot
remove
mRNA_7183
plot
remove
mRNA_7184
remove
mRNA_7185
plot
remove
mRNA_7186
plot