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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15552 and 15553 are separated by 140 nucleotides
15553 and 15554 are separated by 670 nucleotides
15554 and 15555 are separated by 1287 nucleotides
15555 and 15556 are separated by 309 nucleotides
mRNA_7184: 15552 - K02219 CKS1 cyclin-dependent kinase regulatory subunit CKS1, at 1,072,312 to 1,073,593
15552
mRNA_7185: 15553 - K07300 chaA, CAX Ca2+-H+ antiporter, at 1,073,734 to 1,075,504
15553
mRNA_7186: 15554 - HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 1,076,175 to 1,077,434
15554
mRNA_7187: 15555 - K00799 GST, gst glutathione S-transferase, at 1,078,722 to 1,079,084
15555
mRNA_7188: 15556 - K01870 IARS, ileS isoleucyl-tRNA synthetase, at 1,079,394 to 1,083,450
15556
Group
Condition
mRNA
_7184
mRNA
_7185
mRNA
_7186
mRNA
_7187
mRNA
_7188
15552
15553
15554
15555
15556
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-1.2
-0.3
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-1.1
-0.2
-0.3
N.D.
auxotrophy
Dropout Complete
+0.0
-0.2
-0.6
-0.7
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.4
-1.1
+0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.4
-0.3
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.2
+0.0
-0.7
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.3
-0.3
-0.5
N.D.
auxotrophy
YNB Glucose
+0.2
-0.3
-0.2
-0.5
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.3
-0.6
-0.2
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
-0.0
-0.1
-0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.4
-0.6
-0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
-0.3
-0.1
+0.7
N.D.
growth on oleic acid
YNB Glucose
-0.1
-0.2
-0.2
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.4
-0.3
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
-0.7
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.2
-0.3
+0.7
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.1
+0.2
+0.3
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
-0.0
+0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.2
-0.6
+0.9
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.4
-0.2
+0.7
N.D.
growth on ypd
YPD
+0.6
+0.0
-0.0
+0.6
N.D.
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