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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15563 and 15564 are separated by 334 nucleotides
15564 and 15565 are separated by 507 nucleotides
15565 and 15566 are separated by 2182 nucleotides
15566 and 15567 are separated by 158 nucleotides
mRNA_7195: 15563 - KOG0519 Sensory transduction histidine kinase, at 1,094,977 to 1,103,696
15563
mRNA_7196: 15564 - KOG3329 RAN guanine nucleotide release factor, at 1,104,031 to 1,104,798
15564
mRNA_7197: 15565 - KOG0490 Transcription factor, contains HOX domain, at 1,105,306 to 1,105,458
15565
mRNA_7198: 15566 - Hypothetical Protein, at 1,107,641 to 1,108,204
15566
mRNA_7199: 15567 - HMMPfam-Hemerythrin HHE cation binding domain-PF01814, at 1,108,363 to 1,109,217
15567
Group
Condition
mRNA
_7195
mRNA
_7196
mRNA
_7197
mRNA
_7198
mRNA
_7199
15563
15564
15565
15566
15567
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.4
N.D.
-2.3
-0.3
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.5
N.D.
-0.9
-0.7
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.0
N.D.
-1.7
-0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-1.1
N.D.
-0.3
+0.0
-0.4
growth on ricinoleic acid
YNB Glucose
-1.0
N.D.
-0.6
-0.2
-0.1
auxotrophy
YNB Glucose
-0.6
N.D.
-0.7
-0.3
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.3
N.D.
-1.2
+0.1
-0.2
auxotrophy
Dropout Complete
-0.7
N.D.
-1.3
+0.6
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
-0.7
+0.2
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.4
N.D.
-0.9
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-1.2
+0.5
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-1.0
N.D.
+0.9
-0.3
+0.1
growth on oleic acid
YNB Oleic Acid
+0.0
N.D.
-0.3
+0.2
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
N.D.
-0.1
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
N.D.
+1.3
-0.5
-0.1
growth on ypd
YPD
-0.0
N.D.
-0.5
+0.6
+0.3
growth on oleic acid
YNB Glucose
-0.2
N.D.
+0.1
+0.6
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
+0.9
-0.7
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
+0.4
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
N.D.
+0.7
+0.9
-0.7
ypd buoyancy
40 hrs Median Buoyancy
+0.2
N.D.
+1.2
-0.2
+0.2
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