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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15568 and 15569 are separated by 171 nucleotides
15569 and 15570 are separated by 1123 nucleotides
15570 and 15571 are separated by 418 nucleotides
15571 and 15572 are separated by 397 nucleotides
mRNA_7200: 15568 - K14816 REI1 pre-60S factor REI1, at 1,109,776 to 1,111,554
15568
mRNA_7201: 15569 - K10967 KTR1_3 alpha 1,2-mannosyltransferase, at 1,111,726 to 1,113,474
15569
mRNA_7202: 15570 - BLAST expressed protein [Schizophyllum commune H4-8], at 1,114,598 to 1,116,193
15570
mRNA_7203: 15571 - SUPERFAMILY--SSF52047, at 1,116,612 to 1,117,999
15571
mRNA_7204: 15572 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 1,118,397 to 1,120,170
15572
Group
Condition
mRNA
_7200
mRNA
_7201
mRNA
_7202
mRNA
_7203
mRNA
_7204
15568
15569
15570
15571
15572
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
-0.6
-0.2
+0.0
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.5
-0.2
+0.1
-1.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.1
-0.3
-0.4
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.3
-0.1
-0.5
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.1
+0.1
-0.5
-0.0
growth on ricinoleic acid
YNB Glucose
+0.5
-0.5
+0.1
-0.1
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.4
+0.1
-0.4
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.5
-0.1
+0.4
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
-0.2
+0.1
-0.7
-0.2
growth on ypd
YPD
-0.0
+0.1
+0.2
-0.1
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.0
+0.0
-0.4
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.2
-0.2
+0.3
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.3
-0.1
-0.0
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.2
+0.1
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.0
-0.5
+0.0
+0.0
-0.5
growth on oleic acid
YNB Oleic Acid
+1.0
-0.2
-0.0
-0.0
-0.4
auxotrophy
Dropout Complete
+1.1
-0.4
+0.0
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.8
-0.1
+0.0
-0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.9
-0.2
+0.1
+0.5
-0.2
auxotrophy
YNB Glucose
+0.9
-0.2
+0.2
-0.0
+0.1
growth on oleic acid
YNB Glucose
+0.9
+0.3
-0.0
+0.0
-0.0
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