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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15569 and 15570 are separated by 1123 nucleotides
15570 and 15571 are separated by 418 nucleotides
15571 and 15572 are separated by 397 nucleotides
15572 and 15573 are separated by 493 nucleotides
mRNA_7201: 15569 - K10967 KTR1_3 alpha 1,2-mannosyltransferase, at 1,111,726 to 1,113,474
15569
mRNA_7202: 15570 - BLAST expressed protein [Schizophyllum commune H4-8], at 1,114,598 to 1,116,193
15570
mRNA_7203: 15571 - SUPERFAMILY--SSF52047, at 1,116,612 to 1,117,999
15571
mRNA_7204: 15572 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 1,118,397 to 1,120,170
15572
mRNA_7205: 15573 - Hypothetical Protein, at 1,120,664 to 1,121,084
15573
Group
Condition
mRNA
_7201
mRNA
_7202
mRNA
_7203
mRNA
_7204
mRNA
_7205
15569
15570
15571
15572
15573
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.2
+0.1
-1.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.1
-0.4
-0.3
-0.8
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+0.0
+0.0
-0.5
-0.6
growth on ricinoleic acid
YNB Glucose
-0.5
+0.1
-0.1
-0.5
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.1
-0.5
-0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
-0.2
+0.0
-0.6
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.1
-0.0
-0.1
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.1
-0.7
-0.2
-0.1
auxotrophy
Dropout Complete
-0.4
+0.0
-0.1
+0.0
-0.3
growth on oleic acid
YNB Oleic Acid
-0.2
-0.0
-0.0
-0.4
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.0
-0.4
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.3
-0.4
+0.0
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.1
-0.5
-0.0
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.5
-0.1
+0.4
+0.0
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.1
+0.5
-0.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.0
-0.2
+0.2
-0.0
auxotrophy
YNB Glucose
-0.2
+0.2
-0.0
+0.1
-0.2
growth on ypd
YPD
+0.1
+0.2
-0.1
-0.5
+0.3
growth on oleic acid
YNB Glucose
+0.3
-0.0
+0.0
-0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.2
+0.3
-0.2
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.1
+0.1
+0.1
-0.0
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