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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15577 and 15578 are separated by 850 nucleotides
15578 and 15579 are separated by 1045 nucleotides
15579 and 15580 are separated by 458 nucleotides
15580 and 15581 are separated by 309 nucleotides
mRNA_7209: 15577 - K01408 IDE, ide insulysin, at 1,127,911 to 1,131,746
15577
mRNA_7210: 15578 - K15271 HFM1, MER3 ATP-dependent DNA helicase HFM1/MER3, at 1,132,597 to 1,139,005
15578
mRNA_7211: 15579 - HMMPfam-Fungal specific transcription factor domain-PF11951,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,SUPERFAMILY--SSF57701, at 1,140,051 to 1,142,038
15579
mRNA_7212: 15580 - KOG3764 Vesicular amine transporter, at 1,142,497 to 1,144,513
15580
mRNA_7213: 15581 - K14636 SLC18A3, VACHT MFS transporter, DHA1 family, solute carrier family 18 (vesicular acetylcholine transporter), member 3, at 1,144,823 to 1,146,874
15581
Group
Condition
mRNA
_7209
mRNA
_7210
mRNA
_7211
mRNA
_7212
mRNA
_7213
15577
15578
15579
15580
15581
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.1
-0.1
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.1
-0.4
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.2
-0.1
-0.0
-0.2
growth on oleic acid
YNB Oleic Acid
-0.0
-0.0
-0.1
+0.3
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
-0.0
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.2
-0.0
+0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.1
-0.0
+0.3
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.0
-0.2
+0.1
+0.2
growth on oleic acid
YNB Glucose
+0.1
-0.0
-0.2
+0.2
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.0
+0.2
-0.0
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.0
+0.0
+0.1
+0.0
growth on ypd
YPD
+0.7
+0.0
-0.2
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.1
+0.4
-0.0
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.1
+0.2
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.1
+0.1
-0.0
+0.1
growth on ricinoleic acid
YNB Glucose
-0.2
+0.0
+0.1
+0.3
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.0
+0.0
+0.3
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.1
+0.2
+0.0
+0.4
auxotrophy
Dropout Complete
+0.2
+0.2
+0.3
+0.1
-0.1
auxotrophy
YNB Glucose
+0.3
+0.1
+0.4
+0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.3
+0.4
+0.3
+0.0
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