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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15579 and 15580 are separated by 458 nucleotides
15580 and 15581 are separated by 309 nucleotides
15581 and 15582 are separated by 137 nucleotides
15582 and 15583 are separated by 314 nucleotides
mRNA_7211: 15579 - HMMPfam-Fungal specific transcription factor domain-PF11951,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,SUPERFAMILY--SSF57701, at 1,140,051 to 1,142,038
15579
mRNA_7212: 15580 - KOG3764 Vesicular amine transporter, at 1,142,497 to 1,144,513
15580
mRNA_7213: 15581 - K14636 SLC18A3, VACHT MFS transporter, DHA1 family, solute carrier family 18 (vesicular acetylcholine transporter), member 3, at 1,144,823 to 1,146,874
15581
mRNA_7214: 15582 - K17792 TIM54 mitochondrial import inner membrane translocase subunit TIM54, at 1,147,012 to 1,148,920
15582
mRNA_7215: 15583 - K10253 K10253 DOPA 4,5-dioxygenase, at 1,149,235 to 1,150,219
15583
Group
Condition
mRNA
_7211
mRNA
_7212
mRNA
_7213
mRNA
_7214
mRNA
_7215
15579
15580
15581
15582
15583
growth on oleic acid
YNB Oleic Acid
-0.1
+0.3
-0.4
N.D.
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.3
-0.3
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.1
+0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.1
-0.3
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.0
-0.2
N.D.
+0.1
growth on ypd
YPD
-0.2
+0.1
-0.3
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
-0.1
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.1
+0.0
N.D.
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.1
+0.0
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.0
-0.0
N.D.
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.0
-0.2
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.0
+0.1
N.D.
-0.1
growth on oleic acid
YNB Glucose
-0.2
+0.2
-0.1
N.D.
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
+0.2
N.D.
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.3
+0.4
N.D.
-0.5
auxotrophy
Dropout Complete
+0.3
+0.1
-0.1
N.D.
+0.0
growth on ricinoleic acid
YNB Glucose
+0.1
+0.3
+0.3
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.0
+0.4
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.3
+0.0
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.2
-0.1
N.D.
+0.3
auxotrophy
YNB Glucose
+0.4
+0.1
-0.1
N.D.
+0.1
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